|
Name |
|
Date |
Size |
#Lines |
LOC |
| .. | | 03-May-2022 | - |
| Alignment.h | H A D | 28-Feb-2018 | 6.2 KiB | 227 | 162 |
| BamI.cc | H A D | 11-Jan-2019 | 11.2 KiB | 426 | 329 |
| BamI.h | H A D | 11-Jan-2019 | 12.6 KiB | 387 | 295 |
| BamUnalignedI.h | H A D | 07-Feb-2019 | 3.4 KiB | 155 | 91 |
| BowtieI.h | H A D | 16-Sep-2016 | 2.2 KiB | 83 | 32 |
| BustardI.h | H A D | 16-Sep-2016 | 2.9 KiB | 114 | 60 |
| DNANSeq.cc | H A D | 24-Dec-2018 | 3.9 KiB | 184 | 126 |
| DNANSeq.h | H A D | 28-Feb-2018 | 3.4 KiB | 129 | 69 |
| DNASeq.cc | H A D | 28-Feb-2018 | 7.2 KiB | 322 | 225 |
| DNASeq.h | H A D | 28-Feb-2018 | 2.7 KiB | 103 | 44 |
| DNASeq4.cc | H A D | 24-Dec-2018 | 3.1 KiB | 138 | 118 |
| DNASeq4.h | H A D | 11-Jan-2019 | 5.8 KiB | 158 | 113 |
| FastaI.h | H A D | 28-Feb-2018 | 3.1 KiB | 127 | 73 |
| FastqI.h | H A D | 16-Sep-2016 | 4.4 KiB | 185 | 78 |
| GappedAln.h | H A D | 28-Feb-2018 | 30.3 KiB | 1,038 | 708 |
| Hwp.cc | H A D | 28-Feb-2018 | 13.3 KiB | 425 | 253 |
| Hwp.h | H A D | 28-Feb-2018 | 9.9 KiB | 314 | 228 |
| MetaPopInfo.cc | H A D | 24-Dec-2018 | 14.1 KiB | 444 | 334 |
| MetaPopInfo.h | H A D | 24-Dec-2018 | 4.3 KiB | 138 | 90 |
| PopMap.h | H A D | 24-Dec-2018 | 18.3 KiB | 534 | 439 |
| PopSum.cc | H A D | 28-Feb-2019 | 70.9 KiB | 2,317 | 1,490 |
| PopSum.h | H A D | 24-Dec-2018 | 11.4 KiB | 397 | 307 |
| SamI.h | H A D | 28-Feb-2018 | 4.1 KiB | 150 | 79 |
| Seq.cc | H A D | 28-Feb-2018 | 4.1 KiB | 159 | 135 |
| Seq.h | H A D | 28-Feb-2018 | 5.1 KiB | 201 | 148 |
| SuffixTree.cc | H A D | 28-Feb-2018 | 19.8 KiB | 539 | 311 |
| SuffixTree.h | H A D | 28-Feb-2018 | 3.9 KiB | 141 | 99 |
| Tsv.h | H A D | 16-Sep-2016 | 1.7 KiB | 71 | 30 |
| Vcf.cc | H A D | 24-Dec-2018 | 10.5 KiB | 362 | 302 |
| Vcf.h | H A D | 24-Dec-2018 | 15 KiB | 516 | 384 |
| aln_utils.cc | H A D | 24-Dec-2018 | 15.4 KiB | 577 | 449 |
| aln_utils.h | H A D | 24-Dec-2018 | 4.5 KiB | 144 | 96 |
| bootstrap.h | H A D | 28-Feb-2018 | 10.6 KiB | 330 | 193 |
| catalog_utils.cc | H A D | 24-Dec-2018 | 4.1 KiB | 154 | 93 |
| catalog_utils.h | H A D | 24-Dec-2018 | 1.6 KiB | 51 | 19 |
| clean.cc | H A D | 24-Dec-2018 | 18.4 KiB | 684 | 420 |
| clean.h | H A D | 24-Dec-2018 | 13 KiB | 466 | 375 |
| clone_filter.cc | H A D | 24-Dec-2018 | 42.5 KiB | 1,319 | 1,059 |
| clone_filter.h | H A D | 28-Feb-2018 | 3 KiB | 98 | 65 |
| cmb.cc | H A D | 28-Feb-2018 | 11.4 KiB | 436 | 220 |
| cmb.h | H A D | 28-Feb-2018 | 2.6 KiB | 87 | 43 |
| constants.cc | H A D | 24-Dec-2018 | 2.4 KiB | 105 | 79 |
| constants.h | H A D | 24-Dec-2018 | 3.6 KiB | 159 | 97 |
| cstacks.cc | H A D | 11-Jan-2019 | 63.2 KiB | 1,976 | 1,292 |
| cstacks.h | H A D | 24-Dec-2018 | 2.7 KiB | 84 | 52 |
| debruijn.cc | H A D | 23-Jan-2019 | 15 KiB | 472 | 367 |
| debruijn.h | H A D | 23-Jan-2019 | 10.4 KiB | 346 | 215 |
| export_formats.cc | H A D | 08-May-2019 | 110.6 KiB | 3,659 | 2,119 |
| export_formats.h | H A D | 08-May-2019 | 12.2 KiB | 440 | 321 |
| file_io.cc | H A D | 28-Sep-2017 | 31.2 KiB | 980 | 756 |
| file_io.h | H A D | 28-Feb-2018 | 2.7 KiB | 87 | 54 |
| genotype_dictionaries.cc | H A D | 16-Sep-2016 | 15.1 KiB | 529 | 435 |
| genotype_dictionaries.h | H A D | 28-Feb-2018 | 2.3 KiB | 64 | 36 |
| gstacks.cc | H A D | 09-May-2019 | 126.8 KiB | 3,282 | 2,617 |
| gstacks.h | H A D | 09-May-2019 | 12 KiB | 356 | 219 |
| gzFasta.cc | H A D | 08-May-2019 | 4.1 KiB | 146 | 92 |
| gzFasta.h | H A D | 28-Feb-2018 | 1.6 KiB | 61 | 30 |
| gzFastq.h | H A D | 28-Feb-2018 | 6.3 KiB | 242 | 128 |
| input.cc | H A D | 28-Feb-2018 | 3.9 KiB | 191 | 120 |
| input.h | H A D | 24-Dec-2018 | 1.9 KiB | 77 | 45 |
| kmer_filter.cc | H A D | 24-Dec-2018 | 58.2 KiB | 1,839 | 1,221 |
| kmer_filter.h | H A D | 28-Feb-2018 | 3.2 KiB | 95 | 57 |
| kmers.cc | H A D | 24-Dec-2018 | 18.8 KiB | 736 | 476 |
| kmers.h | H A D | 28-Feb-2018 | 3.2 KiB | 101 | 57 |
| locus.cc | H A D | 09-May-2019 | 19.2 KiB | 719 | 548 |
| locus.h | H A D | 09-May-2019 | 11.6 KiB | 365 | 273 |
| locus_readers.h | H A D | 24-Dec-2018 | 36.3 KiB | 1,033 | 787 |
| log_utils.cc | H A D | 08-May-2019 | 5.9 KiB | 227 | 183 |
| log_utils.h | H A D | 28-Feb-2018 | 3.2 KiB | 123 | 65 |
| models.cc | H A D | 24-Dec-2018 | 35.4 KiB | 1,009 | 686 |
| models.h | H A D | 24-Dec-2018 | 13.8 KiB | 406 | 263 |
| mst.cc | H A D | 28-Feb-2018 | 7.6 KiB | 286 | 159 |
| mst.h | H A D | 28-Feb-2018 | 2.4 KiB | 107 | 66 |
| mstack.cc | H A D | 24-Dec-2018 | 6.9 KiB | 262 | 159 |
| mstack.h | H A D | 24-Dec-2018 | 3.7 KiB | 114 | 73 |
| nucleotides.cc | H A D | 28-Feb-2018 | 2.3 KiB | 85 | 71 |
| nucleotides.h | H A D | 24-Dec-2018 | 6.2 KiB | 201 | 135 |
| ordered.h | H A D | 08-May-2019 | 12.2 KiB | 438 | 292 |
| phasedstacks.cc | H A D | 24-Dec-2018 | 56.1 KiB | 1,968 | 1,243 |
| phasedstacks.h | H A D | 28-Feb-2018 | 5.7 KiB | 229 | 181 |
| populations.cc | H A D | 09-May-2019 | 154.3 KiB | 4,271 | 2,666 |
| populations.h | H A D | 09-May-2019 | 14.3 KiB | 357 | 276 |
| process_radtags.cc | H A D | 24-Dec-2018 | 52.2 KiB | 1,473 | 1,128 |
| process_radtags.h | H A D | 24-Dec-2018 | 2.9 KiB | 80 | 53 |
| process_shortreads.cc | H A D | 24-Dec-2018 | 43.6 KiB | 1,172 | 920 |
| process_shortreads.h | H A D | 28-Feb-2018 | 2.7 KiB | 75 | 48 |
| renz.cc | H A D | 24-Dec-2018 | 11.5 KiB | 294 | 281 |
| renz.h | H A D | 28-Feb-2018 | 1 KiB | 33 | 8 |
| smoothing.h | H A D | 28-Feb-2018 | 5.3 KiB | 155 | 80 |
| smoothing_utils.h | H A D | 24-Dec-2018 | 2.2 KiB | 81 | 45 |
| sql_utilities.cc | H A D | 28-Feb-2018 | 9 KiB | 335 | 244 |
| sql_utilities.h | H A D | 28-Feb-2018 | 12 KiB | 419 | 265 |
| sstacks.cc | H A D | 11-Jan-2019 | 48.5 KiB | 1,447 | 917 |
| sstacks.h | H A D | 24-Dec-2018 | 2.7 KiB | 79 | 48 |
| stacks.cc | H A D | 24-Dec-2018 | 3.2 KiB | 148 | 86 |
| stacks.h | H A D | 24-Dec-2018 | 7.6 KiB | 346 | 280 |
| tsv2bam.cc | H A D | 24-Dec-2018 | 20.9 KiB | 656 | 503 |
| ustacks.cc | H A D | 24-Dec-2018 | 97.1 KiB | 3,041 | 1,954 |
| ustacks.h | H A D | 24-Dec-2018 | 4.6 KiB | 136 | 84 |
| utils.cc | H A D | 24-Dec-2018 | 12.1 KiB | 561 | 420 |
| utils.h | H A D | 11-Jan-2019 | 12.6 KiB | 455 | 333 |
| write.cc | H A D | 24-Dec-2018 | 7.7 KiB | 363 | 259 |
| write.h | H A D | 24-Dec-2018 | 1.8 KiB | 56 | 30 |