| /dports/biology/bedtools/bedtools2-2.30.0/docs/content/tools/ |
| H A D | annotate.rst | 1 .. _annotate: target
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | vcfannotate.c | 2973 static void annotate(args_t *args, bcf1_t *line) in annotate() function
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/annotator/ |
| H A D | AS_StrandBiasMutectAnnotation.java | 29 …public Map<String, Object> annotate(ReferenceContext ref, VariantContext vc, AlleleLikelihoods<GAT… in annotate() method in AS_StrandBiasMutectAnnotation
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| H A D | AlleleFraction.java | 40 public void annotate(final ReferenceContext ref, in annotate() method in AlleleFraction
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| H A D | BaseQualityHistogram.java | 23 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in BaseQualityHistogram
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| H A D | ChromosomeCounts.java | 50 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in ChromosomeCounts
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| H A D | CountNs.java | 35 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in CountNs
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| H A D | Coverage.java | 41 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in Coverage
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| H A D | DepthPerAlleleBySample.java | 43 public void annotate(final ReferenceContext ref, in annotate() method in DepthPerAlleleBySample
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| H A D | DepthPerSampleHC.java | 48 public void annotate( final ReferenceContext ref, in annotate() method in DepthPerSampleHC
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| H A D | ExcessHet.java | 64 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in ExcessHet
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| H A D | GenotypeAnnotation.java | 29 public abstract void annotate(final ReferenceContext ref, in annotate() method in GenotypeAnnotation
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| H A D | GenotypeSummaries.java | 35 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in GenotypeSummaries
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| H A D | InbreedingCoeff.java | 69 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in InbreedingCoeff
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| H A D | InfoFieldAnnotation.java | 28 public abstract Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in InfoFieldAnnotation
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| H A D | MappingQualityZero.java | 41 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in MappingQualityZero
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| H A D | OrientationBiasReadCounts.java | 61 public void annotate(final ReferenceContext refContext, in annotate() method in OrientationBiasReadCounts
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| H A D | OriginalAlignment.java | 43 …public Map<String, Object> annotate(ReferenceContext ref, VariantContext vc, AlleleLikelihoods<GAT… in annotate() method in OriginalAlignment
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| H A D | PerAlleleAnnotation.java | 28 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in PerAlleleAnnotation
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| H A D | PossibleDeNovo.java | 96 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in PossibleDeNovo
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| H A D | QualByDepth.java | 56 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in QualByDepth
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| H A D | RMSMappingQuality.java | 234 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in RMSMappingQuality
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| H A D | RankSumTest.java | 24 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in RankSumTest
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| H A D | ReferenceBases.java | 42 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in ReferenceBases
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| H A D | SampleList.java | 30 public Map<String, Object> annotate(final ReferenceContext ref, in annotate() method in SampleList
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