| /dports/biology/jalview/jalview/src/jalview/xml/binding/jalview/ |
| H A D | Sequence.java | 70 protected String biotype; field in Sequence
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| /dports/biology/diamond/diamond-2.0.13/src/data/ |
| H A D | taxonomy_nodes.h | 39 …count = 45, strain = 34, biotype = 35, clade = 36, forma_specialis = 37, genotype = 38, isolate = … enumerator
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| /dports/biology/emboss/EMBOSS-6.6.0/ajax/ensembl/ |
| H A D | ensgene.c | 452 AjPStr biotype, in ensGeneNewIni()
1453 AjBool ensGeneSetBiotype(EnsPGene gene, AjPStr biotype) in ensGeneSetBiotype()
4175 AjPStr biotype = NULL; in geneadaptorFetchAllbyStatement() local
4798 const AjPStr biotype, in ensGeneadaptorFetchAllbyBiotype()
5096 const AjPStr biotype, in ensGeneadaptorFetchAllbySlice()
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| H A D | enstranscript.c | 640 AjPStr biotype, in ensTranscriptNewIni()
2125 AjPStr biotype) in ensTranscriptSetBiotype()
7773 AjPStr biotype = NULL; in transcriptadaptorFetchAllbyStatement() local
8371 const AjPStr biotype, in ensTranscriptadaptorFetchAllbyBiotype()
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| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | gff_utils.h | 45 const char* biotype=gfrec->getAttr("type"); in create_gf() local
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| H A D | gffread.cpp | 325 const char* biotype=gffrec.getAttr("gene_biotype"); in process_transcript() local
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| /dports/biology/gffread/gffread-0.12.7/ |
| H A D | gff_utils.h | 296 const char* biotype=gfrec->getAttr("type"); in create_gf() local
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| H A D | gff_utils.cpp | 514 const char* biotype=gffrec.getAttr("gene_biotype"); in process_transcript() local
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| /dports/biology/bio-mocha/bcftools-1.14/ |
| H A D | csq.c | 394 uint32_t biotype; // one of GF_* types member
930 int biotype = gff_parse_biotype(ss); in gff_parse_transcript() local
956 int biotype = gff_parse_biotype(ss); in gff_parse_gene() local
1374 const char *biotype = kh_key(ign,i); in init_gff() local
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| /dports/biology/bcftools/bcftools-1.14/ |
| H A D | csq.c | 394 uint32_t biotype; // one of GF_* types member
930 int biotype = gff_parse_biotype(ss); in gff_parse_transcript() local
956 int biotype = gff_parse_biotype(ss); in gff_parse_gene() local
1374 const char *biotype = kh_key(ign,i); in init_gff() local
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| /dports/biology/py-pysam/pysam-0.18.0/bcftools/ |
| H A D | csq.c | 394 uint32_t biotype; // one of GF_* types member
930 int biotype = gff_parse_biotype(ss); in gff_parse_transcript() local
956 int biotype = gff_parse_biotype(ss); in gff_parse_gene() local
1374 const char *biotype = kh_key(ign,i); in init_gff() local
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| H A D | csq.c.pysam.c | 396 uint32_t biotype; // one of GF_* types member
932 int biotype = gff_parse_biotype(ss); in gff_parse_transcript() local
958 int biotype = gff_parse_biotype(ss); in gff_parse_gene() local
1376 const char *biotype = kh_key(ign,i); in init_gff() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/util/ |
| H A D | feature.cpp | 4261 string& biotype, in sGetFeatureGeneBiotypeWrapper()
4488 string& biotype) in GetFeatureGeneBiotypeFaster()
4498 string& biotype) in GetFeatureGeneBiotype()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/util/ |
| H A D | feature.cpp | 4261 string& biotype, in sGetFeatureGeneBiotypeWrapper()
4488 string& biotype) in GetFeatureGeneBiotypeFaster()
4498 string& biotype) in GetFeatureGeneBiotype()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/ |
| H A D | gff_writer.cpp | 1012 string biotype; in xAssignFeatureAttributeGeneBiotype() local
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