Home
last modified time | relevance | path

Searched defs:gapped_calculation (Results 1 – 25 of 35) sorted by relevance

12

/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/
H A Dblast_parameters.c285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local
593 Boolean gapped_calculation, in BlastLinkHSPParametersNew()
621 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate()
736 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local
833 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
H A Dhspfilter_collector.c327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
H A Dlink_hsps.c418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs()
1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs()
1764 Boolean gapped_calculation) in BLAST_LinkHsps()
H A Dblast_hits.c188 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax()
1790 Boolean gapped_calculation, in Blast_HSPListGetEvalues()
1873 Boolean gapped_calculation, in Blast_HSPListGetBitScores()
2938 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
H A Dblast_options.c1398 Boolean gapped_calculation) in BlastHitSavingOptionsNew()
H A Dblast_options.h428 Boolean gapped_calculation; /**< gap-free search if FALSE */ member
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/
H A Dblast_parameters.c285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local
597 Boolean gapped_calculation, in BlastLinkHSPParametersNew()
625 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate()
740 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local
837 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
H A Dhspfilter_collector.c327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
H A Dlink_hsps.c418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs()
1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs()
1764 Boolean gapped_calculation) in BLAST_LinkHsps()
H A Dblast_hits.c44 GetPrelimHitlistSize(Int4 hitlist_size, Int4 compositionBasedStats, Boolean gapped_calculation) in GetPrelimHitlistSize()
213 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax()
1815 Boolean gapped_calculation, in Blast_HSPListGetEvalues()
1908 Boolean gapped_calculation, in Blast_HSPListGetBitScores()
3046 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
H A Dhspfilter_besthit.c595 Boolean gapped_calculation) in BlastHSPBestHitParamsNew()
H A Dhspfilter_culling.c787 Boolean gapped_calculation) in BlastHSPCullingParamsNew()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/
H A Dblast_parameters.c285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local
597 Boolean gapped_calculation, in BlastLinkHSPParametersNew()
625 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate()
740 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local
837 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
H A Dhspfilter_collector.c327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
H A Dlink_hsps.c418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs()
1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs()
1764 Boolean gapped_calculation) in BLAST_LinkHsps()
H A Dblast_hits.c44 GetPrelimHitlistSize(Int4 hitlist_size, Int4 compositionBasedStats, Boolean gapped_calculation) in GetPrelimHitlistSize()
213 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax()
1815 Boolean gapped_calculation, in Blast_HSPListGetEvalues()
1908 Boolean gapped_calculation, in Blast_HSPListGetBitScores()
3046 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
H A Dhspfilter_besthit.c595 Boolean gapped_calculation) in BlastHSPBestHitParamsNew()
H A Dhspfilter_culling.c787 Boolean gapped_calculation) in BlastHSPCullingParamsNew()
H A Dblast_options.c1429 Boolean gapped_calculation) in BlastHitSavingOptionsNew()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dprelim_stage.cpp366 void s_FixNumIdent(BlastHSPList *hsp_list, bool gapped_calculation) in s_FixNumIdent()
379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dprelim_stage.cpp366 void s_FixNumIdent(BlastHSPList *hsp_list, bool gapped_calculation) in s_FixNumIdent()
379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/
H A Dtwoseq_api.h121 Boolean gapped_calculation; /**< Perform gapped alignments. Default = TRUE*/ member
/dports/biology/ncbi-toolkit/ncbi/tools/
H A Dposit.h316 Boolean gapped_calculation; member
H A Dblastdef.h1117 Boolean gapped_calculation; /* Is a gapped calc. being done? */ member
1231 Boolean gapped_calculation; member
1280 Boolean gapped_calculation; member
1397 Boolean gapped_calculation; /* Is a gapped calc. being done? */ member
/dports/biology/ncbi-toolkit/ncbi/demo/
H A Dbl2seq.c995 Boolean gapped_calculation; in Main_old() local

12