/dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
H A D | blast_parameters.c | 285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local 593 Boolean gapped_calculation, in BlastLinkHSPParametersNew() 621 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate() 736 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local 833 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
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H A D | hspfilter_collector.c | 327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
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H A D | link_hsps.c | 418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs() 1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs() 1764 Boolean gapped_calculation) in BLAST_LinkHsps()
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H A D | blast_hits.c | 188 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax() 1790 Boolean gapped_calculation, in Blast_HSPListGetEvalues() 1873 Boolean gapped_calculation, in Blast_HSPListGetBitScores() 2938 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
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H A D | blast_options.c | 1398 Boolean gapped_calculation) in BlastHitSavingOptionsNew()
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H A D | blast_options.h | 428 Boolean gapped_calculation; /**< gap-free search if FALSE */ member
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
H A D | blast_parameters.c | 285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local 597 Boolean gapped_calculation, in BlastLinkHSPParametersNew() 625 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate() 740 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local 837 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
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H A D | hspfilter_collector.c | 327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
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H A D | link_hsps.c | 418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs() 1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs() 1764 Boolean gapped_calculation) in BLAST_LinkHsps()
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H A D | blast_hits.c | 44 GetPrelimHitlistSize(Int4 hitlist_size, Int4 compositionBasedStats, Boolean gapped_calculation) in GetPrelimHitlistSize() 213 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax() 1815 Boolean gapped_calculation, in Blast_HSPListGetEvalues() 1908 Boolean gapped_calculation, in Blast_HSPListGetBitScores() 3046 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
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H A D | hspfilter_besthit.c | 595 Boolean gapped_calculation) in BlastHSPBestHitParamsNew()
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H A D | hspfilter_culling.c | 787 Boolean gapped_calculation) in BlastHSPCullingParamsNew()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
H A D | blast_parameters.c | 285 Boolean gapped_calculation = TRUE; in BlastInitialWordParametersUpdate() local 597 Boolean gapped_calculation, in BlastLinkHSPParametersNew() 625 Boolean gapped_calculation) in BlastLinkHSPParametersUpdate() 740 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersNew() local 837 Boolean gapped_calculation = TRUE; in BlastHitSavingParametersUpdate() local
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H A D | hspfilter_collector.c | 327 Boolean gapped_calculation) in BlastHSPCollectorParamsNew()
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H A D | link_hsps.c | 418 Boolean gapped_calculation) in s_BlastEvenGapLinkHSPs() 1615 const BlastLinkHSPParameters* link_hsp_params, Boolean gapped_calculation) in s_BlastUnevenGapLinkHSPs() 1764 Boolean gapped_calculation) in BLAST_LinkHsps()
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H A D | blast_hits.c | 44 GetPrelimHitlistSize(Int4 hitlist_size, Int4 compositionBasedStats, Boolean gapped_calculation) in GetPrelimHitlistSize() 213 Int4 BlastHspNumMax(Boolean gapped_calculation, const BlastHitSavingOptions* options) in BlastHspNumMax() 1815 Boolean gapped_calculation, in Blast_HSPListGetEvalues() 1908 Boolean gapped_calculation, in Blast_HSPListGetBitScores() 3046 Boolean gapped_calculation, in Blast_HSPListAdjustOddBlastnScores()
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H A D | hspfilter_besthit.c | 595 Boolean gapped_calculation) in BlastHSPBestHitParamsNew()
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H A D | hspfilter_culling.c | 787 Boolean gapped_calculation) in BlastHSPCullingParamsNew()
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H A D | blast_options.c | 1429 Boolean gapped_calculation) in BlastHitSavingOptionsNew()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | prelim_stage.cpp | 366 void s_FixNumIdent(BlastHSPList *hsp_list, bool gapped_calculation) in s_FixNumIdent() 379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | prelim_stage.cpp | 366 void s_FixNumIdent(BlastHSPList *hsp_list, bool gapped_calculation) in s_FixNumIdent() 379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
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/dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
H A D | twoseq_api.h | 121 Boolean gapped_calculation; /**< Perform gapped alignments. Default = TRUE*/ member
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/dports/biology/ncbi-toolkit/ncbi/tools/ |
H A D | posit.h | 316 Boolean gapped_calculation; member
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H A D | blastdef.h | 1117 Boolean gapped_calculation; /* Is a gapped calc. being done? */ member 1231 Boolean gapped_calculation; member 1280 Boolean gapped_calculation; member 1397 Boolean gapped_calculation; /* Is a gapped calc. being done? */ member
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/dports/biology/ncbi-toolkit/ncbi/demo/ |
H A D | bl2seq.c | 995 Boolean gapped_calculation; in Main_old() local
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