| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | genes.h | 107 void gene_id(string& gid) { _gene_id = gid; } in gene_id() function
108 const string& gene_id() const { return _gene_id; } in gene_id() function
168 const string& gene_id() const { return _gene_id; } in gene_id() function
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| H A D | compress_gtf.cpp | 155 string gene_id; in compress_genes() local
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| H A D | gff.h | 106 …char* gene_id; //value of gene_id attribute (GTF) if present or ID attribute of a gene feature (GF… variable
850 void setGeneID(const char* gene_id) { in setGeneID()
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| H A D | cuffnorm.cpp | 506 string gene_id = columns[0]; in parse_norm_standards_file() local
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| H A D | cuffcluster.cpp | 153 string gene_id; member
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| H A D | cufflinks.cpp | 1041 int gene_id = -1; in quantitate_transcript_cluster() local
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| H A D | cuffquant.cpp | 998 string gene_id = columns[0]; in parse_norm_standards_file() local
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| /dports/biology/ugene/ugene-40.1/data/snp_scripts/ |
| H A D | update_d_db.py | 37 gene_id = clms[0] variable
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/entrezgene/unit_test/ |
| H A D | unit_test_entrezgene.cpp | 52 static void s_GetObject(const string& gene_id, CEntrezgene& eg_obj) in s_GetObject()
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| /dports/biology/py-gffutils/gffutils-0.10.1/gffutils/ |
| H A D | gffwriter.py | 79 def write_gene_recs(self, db, gene_id): argument
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| /dports/biology/py-gffutils/gffutils-0.10.1/gffutils/scripts/ |
| H A D | gffutils-flybase-convert.py | 104 gene_id = gene.id variable
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| /dports/biology/p5-transdecoder/TransDecoder-TransDecoder-v5.4.0/PerlLib/ |
| H A D | GTF.pm | 2644 sub gene_id{ subroutine
3186 sub gene_id{ subroutine
3983 sub gene_id{ subroutine
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| /dports/biology/bcftools/bcftools-1.14/misc/ |
| H A D | gff2gff.py | 24 def __init__(self, gene_id): argument
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| /dports/biology/bio-mocha/bcftools-1.14/misc/ |
| H A D | gff2gff.py | 24 def __init__(self, gene_id): argument
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| /dports/biology/kallisto/kallisto-0.46.1/src/ |
| H A D | GeneModel.h | 28 int gene_id; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
| H A D | gff_reader.cpp | 307 string gene_id; in Read() local
618 string gene_id; in x_ParseFeatRecord() local
1401 string gene_id; in x_CreateGeneFeatures() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
| H A D | gff_reader.cpp | 307 string gene_id; in Read() local
618 string gene_id; in x_ParseFeatRecord() local
1401 string gene_id; in x_CreateGeneFeatures() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
| H A D | variation_util2.cpp | 3039 void CVariationUtil::s_AttachGeneIDdbxref(CVariantPlacement& p, int gene_id) in s_AttachGeneIDdbxref()
3140 int gene_id = it->first; in SetPlacementProperties() local
3423 int gene_id = gene_id_and_prop.first; in GetLocationProperties() local
3442 int gene_id, in x_Add()
3631 const int gene_id = s_GetGeneID(mf, ft); in x_Index() local
3659 const int gene_id = s_GetGeneID(mf, ft); in x_Index() local
3843 int gene_id = s_GetGeneIdForProduct(bsh); in x_Index() local
3854 int gene_id = 0; in s_GetGeneID() local
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| /dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/uk/ac/sanger/artemis/components/genebuilder/ |
| H A D | GeneComponentTree.java | 65 final String gene_id; in GeneComponentTree() local
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/kegg/ |
| H A D | __init__.py | 261 def get_enzymes_by_gene(self, gene_id): argument
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| /dports/biology/py-orange3-bioinformatics/Orange3-Bioinformatics-4.3.1/orangecontrib/bioinformatics/cluster_analysis/ |
| H A D | __init__.py | 27 def __init__(self, gene_name, gene_id): argument
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| /dports/biology/py-deeptoolsintervals/deeptoolsintervals-0.1.9/deeptoolsintervals/tree/ |
| H A D | gtf.h | 50 int32_t gene_id; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
| H A D | gene_model.cpp | 222 Int8 gene_id, in ConvertAlignToAnnot()
765 Int8 gene_id, in ConvertAlignToAnnot()
1826 const CSeq_id& genomic_id, Int8 gene_id) in x_CreateGeneFeature()
4188 Int8 gene_id, in ConvertMixedAlignToAnnot()
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| /dports/biology/stringtie/stringtie-2.1.1/gclib/ |
| H A D | gff.h | 250 char* gene_id; //GTF only: value of "gene_id" attribute if present variable
998 void setGeneID(const char* gene_id) { in setGeneID()
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| /dports/biology/libgff/libgff-2.0.0/include/ |
| H A D | gff.h | 250 char* gene_id; //GTF only: value of "gene_id" attribute if present variable
998 void setGeneID(const char* gene_id) { in setGeneID()
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