| /dports/deskutils/pal/pal-0.4.3/src/ |
| H A D | search.c | 45 GList* hit_list = NULL; in pal_search_get_results() local
92 GList* hit_list = pal_search_get_results(search_string, date, window); in pal_search_view() local
176 GList* hit_list = pal_search_get_results(search_string, date, window); in pal_search_event_num() local
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| /dports/science/apbs/apbs-pdb2pqr-apbs-1.5-102-g500c1473/pdb2pqr/pdb2pka/ |
| H A D | ligand_topology.py | 619 def gothroughallnbsofmatchlistatom(stored_nbs_of_atom2match,t,already_visited,hit_list): argument
647 already_visited=[],hit_list=[]): argument
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| /dports/games/easyrpg-player/Player-0.7.0/src/ |
| H A D | rtp.cpp | 54 static void detect_helper(const FilesystemView& fs, std::vector<struct RTP::RtpHitInfo>& hit_list, in detect_helper()
74 std::vector<struct RTP::RtpHitInfo> hit_list = {{ in Detect() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | prelim_stage.cpp | 379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
440 BlastHitList * hit_list = q_list_ptr[i]; in x_BuildStdSegList() local
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| H A D | blast_seqalign.cpp | 1545 BlastHitList2SeqAlign_OMF(const BlastHitList * hit_list, in BlastHitList2SeqAlign_OMF()
1673 BlastHitList* hit_list = one_phi_results->hitlist_array[0]; in PhiBlastResults2SeqAlign_OMF() local
1779 BlastHitList* hit_list = results->hitlist_array[qindex]; in s_BLAST_OneSubjectResults2CSeqAlign() local
1961 BlastHitList* hit_list = results->hitlist_array[index]; in s_BlastResults2SeqAlignDatabaseSearch_OMF() local
2092 BlastHitList* hit_list, in BLASTPrelminSearchHitListToStdSeg()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | prelim_stage.cpp | 379 void s_GetBitScores(BlastHitList * hit_list, bool gapped_calculation, const BlastScoreBlk * sbp) in s_GetBitScores()
440 BlastHitList * hit_list = q_list_ptr[i]; in x_BuildStdSegList() local
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| H A D | blast_seqalign.cpp | 1545 BlastHitList2SeqAlign_OMF(const BlastHitList * hit_list, in BlastHitList2SeqAlign_OMF()
1673 BlastHitList* hit_list = one_phi_results->hitlist_array[0]; in PhiBlastResults2SeqAlign_OMF() local
1779 BlastHitList* hit_list = results->hitlist_array[qindex]; in s_BLAST_OneSubjectResults2CSeqAlign() local
1961 BlastHitList* hit_list = results->hitlist_array[index]; in s_BlastResults2SeqAlignDatabaseSearch_OMF() local
2092 BlastHitList* hit_list, in BLASTPrelminSearchHitListToStdSeg()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | traceback_unit_test.cpp | 310 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
446 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
571 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
719 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
933 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
1041 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
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| H A D | rmblast_traceback_unit_test.cpp | 308 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_FIXTURE_TEST_SUITE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | traceback_unit_test.cpp | 310 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
446 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
571 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
719 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
933 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
1041 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_AUTO_TEST_CASE() local
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| H A D | rmblast_traceback_unit_test.cpp | 308 BlastHitList* hit_list = results->hitlist_array[0]; in BOOST_FIXTURE_TEST_SUITE() local
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | repeats_filter.c | 119 BlastHitList* hit_list = results->hitlist_array[query_index]; in s_FillMaskLocFromBlastHSPResults() local
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| /dports/devel/brz/breezy-3.2.0/breezy/ |
| H A D | rename_map.py | 112 def _match_hits(hit_list): argument
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_hits.c | 3056 s_BlastHitListPurge(BlastHitList* hit_list) in s_BlastHitListPurge()
3080 s_BlastHitListInsertHSPListInHeap(BlastHitList* hit_list, in s_BlastHitListInsertHSPListInHeap()
3127 Int2 Blast_HitListUpdate(BlastHitList* hit_list, in Blast_HitListUpdate()
3187 Blast_HitListPurgeNullHSPLists(BlastHitList* hit_list) in Blast_HitListPurgeNullHSPLists()
3216 Int2 Blast_HitListSortByEvalue(BlastHitList* hit_list) in Blast_HitListSortByEvalue()
3271 BlastHitList* hit_list; in Blast_HSPResultsSortByEvalue() local
3292 BlastHitList* hit_list; in Blast_HSPResultsReverseSort() local
3308 BlastHitList* hit_list; in Blast_HSPResultsReverseOrder() local
3463 BlastHitList* hit_list = NULL; in PHIBlast_HSPResultsSplit() local
3580 BlastHitList* hit_list = NULL; in s_TrimResultsByTotalHSPLimit() local
[all …]
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| H A D | hspfilter_collector.c | 207 BlastHitList* hit_list; in s_BlastHSPCollectorRun_RPS() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_hits.c | 3164 s_BlastHitListPurge(BlastHitList* hit_list) in s_BlastHitListPurge()
3188 s_BlastHitListInsertHSPListInHeap(BlastHitList* hit_list, in s_BlastHitListInsertHSPListInHeap()
3235 Int2 Blast_HitListUpdate(BlastHitList* hit_list, in Blast_HitListUpdate()
3294 Blast_HitListPurgeNullHSPLists(BlastHitList* hit_list) in Blast_HitListPurgeNullHSPLists()
3323 Int2 Blast_HitListSortByEvalue(BlastHitList* hit_list) in Blast_HitListSortByEvalue()
3378 BlastHitList* hit_list; in Blast_HSPResultsSortByEvalue() local
3399 BlastHitList* hit_list; in Blast_HSPResultsReverseSort() local
3415 BlastHitList* hit_list; in Blast_HSPResultsReverseOrder() local
3570 BlastHitList* hit_list = NULL; in PHIBlast_HSPResultsSplit() local
3687 BlastHitList* hit_list = NULL; in s_TrimResultsByTotalHSPLimit() local
[all …]
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| H A D | blast_hspstream.c | 291 BlastHitList* hit_list = NULL; in BlastHSPStreamRead() local
818 BlastHitList* hit_list; in BlastHSPCBSStreamClose() local
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| H A D | hspfilter_besthit.c | 91 BlastHitList * hit_list) in s_ExportToHitlist()
148 BlastHitList * hit_list) in s_ImportFromHitlist()
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| H A D | hspfilter_collector.c | 207 BlastHitList* hit_list; in s_BlastHSPCollectorRun_RPS() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_hits.c | 3164 s_BlastHitListPurge(BlastHitList* hit_list) in s_BlastHitListPurge()
3188 s_BlastHitListInsertHSPListInHeap(BlastHitList* hit_list, in s_BlastHitListInsertHSPListInHeap()
3235 Int2 Blast_HitListUpdate(BlastHitList* hit_list, in Blast_HitListUpdate()
3294 Blast_HitListPurgeNullHSPLists(BlastHitList* hit_list) in Blast_HitListPurgeNullHSPLists()
3323 Int2 Blast_HitListSortByEvalue(BlastHitList* hit_list) in Blast_HitListSortByEvalue()
3378 BlastHitList* hit_list; in Blast_HSPResultsSortByEvalue() local
3399 BlastHitList* hit_list; in Blast_HSPResultsReverseSort() local
3415 BlastHitList* hit_list; in Blast_HSPResultsReverseOrder() local
3570 BlastHitList* hit_list = NULL; in PHIBlast_HSPResultsSplit() local
3687 BlastHitList* hit_list = NULL; in s_TrimResultsByTotalHSPLimit() local
[all …]
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| H A D | blast_hspstream.c | 291 BlastHitList* hit_list = NULL; in BlastHSPStreamRead() local
818 BlastHitList* hit_list; in BlastHSPCBSStreamClose() local
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| H A D | hspfilter_besthit.c | 91 BlastHitList * hit_list) in s_ExportToHitlist()
148 BlastHitList * hit_list) in s_ImportFromHitlist()
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| H A D | hspfilter_collector.c | 207 BlastHitList* hit_list; in s_BlastHSPCollectorRun_RPS() local
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| /dports/biology/ncbi-toolkit/ncbi/demo/ |
| H A D | seedtop.c | 181 hit_ptr hit_list; /*list of matches to one database sequence*/ in Main() local
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| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | pseed3.c | 735 hit_ptr hit_list = NULL; /*list of matches to one database sequence*/ in parallel_seed_search() local
916 Int4 bi, Int4 bj, Int4 ei, Int4 ej, hit_ptr *hit_list, Nlm_FloatHi mul) in insert_hit()
1024 hit_ptr hit_list = NULL; in get_hits() local
1391 void LIBCALL storeOneMatch(hit_ptr hit_list, Int4 seqno, Uint1Ptr seq, in storeOneMatch()
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