| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/hmmer2/ |
| H A D | fast_algorithms.cpp | 59 P7Viterbi(unsigned char *dsq, int L, struct plan7_s *hmm, struct dpmatrix_s *mx, struct p7trace_s *… in P7Viterbi()
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| H A D | masks.cpp | 172 TraceScoreCorrection(struct plan7_s *hmm, struct p7trace_s *tr, unsigned char *dsq) in TraceScoreCorrection()
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| H A D | altivec_algorithms.cpp | 224 AllocPlan7Body(struct plan7_s *hmm, int M) in AllocPlan7Body()
530 P7Viterbi(unsigned char *dsq, int L, struct plan7_s *hmm, struct dpmatrix_s *mx, struct p7trace_s *… in P7Viterbi()
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| H A D | modelmakers.cpp | 508 struct plan7_s *hmm; /* RETURN: new hmm */ in matassign2hmm() local
832 annotate_model(struct plan7_s *hmm, int *matassign, MSA *msa) in annotate_model()
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| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/hmm2/src/u_calibrate/ |
| H A D | uhmmcalibrate.h | 43 plan7_s* hmm; /* ptr to single HMM to search with */ member
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| H A D | HMMCalibrateTask.cpp | 12 HMMCalibrateTask::HMMCalibrateTask(plan7_s *hmm, const UHMMCalibrateSettings &s) in HMMCalibrateTask()
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| /dports/biology/wise/wise2.4.1/src/HMMer2/ |
| H A D | hmmemit.c | 64 struct plan7_s *hmm; /* HMM to generate from */ in main() local
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| H A D | hmmcalibrate.c | 77 struct plan7_s *hmm; /* the hidden Markov model */ in main() local
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| H A D | debug.c | 113 P7PrintTrace(FILE *fp, struct p7trace_s *tr, struct plan7_s *hmm, char *dsq) in P7PrintTrace()
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| /dports/audio/julius/julius-4.1.2/libsent/src/phmm/ |
| H A D | vsegment.c | 53 viterbi_segment(HMM *hmm, HTK_Param *param, HMMWork *wrk, boolean multipath, int *endstates, int ul… in viterbi_segment()
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| /dports/math/mlpack/mlpack-3.4.2/src/mlpack/methods/hmm/ |
| H A D | hmm_model.hpp | 20 namespace hmm { namespace
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_sse/ |
| H A D | null2.c | 272 P7_HMM *hmm = NULL; in main() local
382 P7_HMM *hmm = NULL; in utest_null2_expectation() local
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| H A D | fwdback.c | 789 P7_HMM *hmm = NULL; in main() local
897 P7_HMM *hmm = NULL; in utest_fwdback() local
1072 P7_HMM *hmm = NULL; in main() local
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/impl_vmx/ |
| H A D | null2.c | 281 P7_HMM *hmm = NULL; in main() local
391 P7_HMM *hmm = NULL; in utest_null2_expectation() local
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| H A D | fwdback.c | 788 P7_HMM *hmm = NULL; in main() local
896 P7_HMM *hmm = NULL; in utest_fwdback() local
1065 P7_HMM *hmm = NULL; in main() local
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| /dports/biology/hmmer/hmmer-3.3/src/impl_sse/ |
| H A D | null2.c | 272 P7_HMM *hmm = NULL; in main() local
382 P7_HMM *hmm = NULL; in utest_null2_expectation() local
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| H A D | fwdback.c | 789 P7_HMM *hmm = NULL; in main() local
897 P7_HMM *hmm = NULL; in utest_fwdback() local
1072 P7_HMM *hmm = NULL; in main() local
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| /dports/biology/hmmer/hmmer-3.3/src/impl_vmx/ |
| H A D | null2.c | 281 P7_HMM *hmm = NULL; in main() local
391 P7_HMM *hmm = NULL; in utest_null2_expectation() local
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| /dports/audio/pocketsphinx/pocketsphinx-0.8/src/libpocketsphinx/ |
| H A D | phone_loop_search.h | 64 hmm_t hmm; /**< Basic HMM structure. */ member
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| /dports/biology/infernal/infernal-1.1.3/hmmer/src/ |
| H A D | generic_vtrace.c | 201 P7_HMM *hmm = NULL; in main() local
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| H A D | p7_bg.c | 523 P7_HMM *hmm = NULL; in main() local
670 P7_HMM *hmm = NULL; in main() local
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| /dports/biology/hmmer/hmmer-3.3/src/ |
| H A D | generic_vtrace.c | 201 P7_HMM *hmm = NULL; in main() local
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| H A D | p7_bg.c | 523 P7_HMM *hmm = NULL; in main() local
670 P7_HMM *hmm = NULL; in main() local
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| /dports/biology/infernal/infernal-1.1.3/src/ |
| H A D | cm_file.c | 1126 P7_HMM *hmm = NULL; in cm_p7_hmmfile_Read() local
1537 P7_HMM *hmm = NULL; in read_asc_1p1_cm() local
2121 P7_HMM *hmm = NULL; in read_bin_1p1_cm() local
2797 P7_HMM *hmm = NULL; in read_asc30hmm() local
3136 P7_HMM *hmm = NULL; in read_bin30hmm() local
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| /dports/emulators/stella/stella-6.6/src/emucore/tia/ |
| H A D | Missile.cxx | 66 void Missile::hmm(uInt8 value) in hmm() function in Missile
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