Searched defs:introntype (Results 1 – 9 of 9) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | intron.c | 29 int introntype, leftdi, rightdi; variable
179 Intron_sensedir (int introntype) { in Intron_sensedir()
190 Intron_canonical_sensedir (int introntype) { in Intron_canonical_sensedir()
202 Intron_level (int introntype) { in Intron_level()
217 Intron_type_string (int introntype) { in Intron_type_string()
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| H A D | pairdef.h | 35 int introntype; member
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| H A D | chimera.c | 824 int introntype; in find_exonexon_fwd() local
962 int introntype; in find_exonexon_rev() local
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| H A D | indel.c | 683 int introntype, intron_level, best_intron_level; in Indel_resolve_middle_deletion_or_splice() local
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| H A D | dynprog_genome.c | 2477 int introntype; in bridge_intron_gap_site_level() local
3015 int introntype; in genome_gap_simple() local
3272 int *nmatches, int *nmismatches, int *nopens, int *nindels, int *exonhead, int *introntype, in Dynprog_genome_gap()
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| H A D | pairpool.c | 306 int introntype, char genome, char genomealt, bool extraexonp) { in Pairpool_push_gapalign()
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| H A D | path-solve.c | 501 int introntype; in attach_qstart_diagonal() local
1479 int introntype; in attach_qend_diagonal() local
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| H A D | kmer-search.c | 5259 int introntype, sensedir; in combine_ends_plus() local
5788 int introntype, sensedir; in combine_ends_minus() local
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| H A D | stage3.c | 1748 int queryjump, genomejump, leftquerypos, rightquerypos, curquerypos, introntype, intronlength; in assign_gap_types() local
2032 int queryjump, genomejump, leftquerypos, rightquerypos, introntype, intronlength; in assign_intron_probs() local
2449 int introntype; in add_dualbreak() local
2561 Pair_T leftpair, Pair_T rightpair, char comp, int introntype, int ngap, in add_intron()
4997 int leftquerypos, rightquerypos, introntype, k; in fill_in_gaps() local
9352 int finalscore, nmatches, nmismatches, nopens, nindels, exonhead, introntype; in traverse_genome_gap() local
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