| .. | | 07-May-2022 | - |
| Makefile.am | H A D | 17-Sep-2020 | 47.8 KiB | 946 | 743 |
| Makefile.in | H A D | 17-Sep-2020 | 6.2 MiB | 51,823 | 45,255 |
| access.c | H A D | 10-Apr-2020 | 34.3 KiB | 1,380 | 1,073 |
| access.h | H A D | 10-Apr-2020 | 2.1 KiB | 85 | 62 |
| assert.c | H A D | 12-Mar-2020 | 244 | 17 | 6 |
| assert.h | H A D | 12-Mar-2020 | 334 | 18 | 11 |
| atoi.c | H A D | 13-Mar-2020 | 929.6 KiB | 16,454 | 16,431 |
| atoi.h | H A D | 13-Mar-2020 | 240 | 14 | 8 |
| atoiindex.c | H A D | 03-Jun-2020 | 38.3 KiB | 1,216 | 999 |
| bigendian.c | H A D | 12-Mar-2020 | 11.9 KiB | 551 | 423 |
| bigendian.h | H A D | 12-Mar-2020 | 3.1 KiB | 108 | 88 |
| bitpack64-access.c | H A D | 12-Mar-2020 | 73.6 KiB | 3,504 | 2,482 |
| bitpack64-access.h | H A D | 12-Mar-2020 | 675 | 24 | 15 |
| bitpack64-incr.c | H A D | 12-Mar-2020 | 193.2 KiB | 10,122 | 7,606 |
| bitpack64-incr.h | H A D | 12-Mar-2020 | 862 | 31 | 20 |
| bitpack64-read.c | H A D | 12-Mar-2020 | 427.6 KiB | 15,605 | 11,703 |
| bitpack64-read.h | H A D | 12-Mar-2020 | 937 | 35 | 23 |
| bitpack64-readtwo.c | H A D | 12-Mar-2020 | 406.8 KiB | 14,880 | 10,344 |
| bitpack64-readtwo.h | H A D | 12-Mar-2020 | 391 | 16 | 10 |
| bitpack64-write.c | H A D | 12-Mar-2020 | 198.3 KiB | 6,047 | 4,483 |
| bitpack64-write.h | H A D | 12-Mar-2020 | 1.1 KiB | 30 | 25 |
| block.c | H A D | 12-Mar-2020 | 11.1 KiB | 456 | 372 |
| block.h | H A D | 12-Mar-2020 | 1.4 KiB | 67 | 55 |
| bool.h | H A D | 12-Mar-2020 | 264 | 18 | 9 |
| boyer-moore.c | H A D | 12-Mar-2020 | 15.7 KiB | 590 | 504 |
| boyer-moore.h | H A D | 12-Mar-2020 | 637 | 23 | 16 |
| bzip2.c | H A D | 12-Mar-2020 | 2.6 KiB | 162 | 130 |
| bzip2.h | H A D | 12-Mar-2020 | 366 | 27 | 17 |
| cellpool.c | H A D | 12-Mar-2020 | 4.5 KiB | 212 | 158 |
| cellpool.h | H A D | 12-Mar-2020 | 779 | 44 | 33 |
| changepoint.c | H A D | 12-Mar-2020 | 9.7 KiB | 354 | 266 |
| changepoint.h | H A D | 12-Mar-2020 | 327 | 13 | 7 |
| chimera.c | H A D | 12-Mar-2020 | 39.4 KiB | 1,211 | 1,010 |
| chimera.h | H A D | 12-Mar-2020 | 2.5 KiB | 75 | 64 |
| chrnum.c | H A D | 12-Mar-2020 | 2 KiB | 96 | 79 |
| chrnum.h | H A D | 21-Apr-2020 | 682 | 26 | 20 |
| chrom.c | H A D | 12-Mar-2020 | 9.3 KiB | 388 | 297 |
| chrom.h | H A D | 12-Mar-2020 | 1.2 KiB | 53 | 43 |
| cigar.c | H A D | 04-Jun-2020 | 87.3 KiB | 2,365 | 1,907 |
| cigar.h | H A D | 04-Jun-2020 | 1.6 KiB | 44 | 35 |
| cmet.c | H A D | 13-Mar-2020 | 929.6 KiB | 16,457 | 16,431 |
| cmet.h | H A D | 13-Mar-2020 | 240 | 14 | 8 |
| cmetindex.c | H A D | 03-Jun-2020 | 42.1 KiB | 1,356 | 1,111 |
| comp.h | H A D | 12-Mar-2020 | 809 | 37 | 24 |
| complement.h | H A D | 12-Mar-2020 | 1.9 KiB | 39 | 8 |
| compress-write.c | H A D | 03-Jun-2020 | 29.5 KiB | 1,079 | 864 |
| compress-write.h | H A D | 05-Apr-2020 | 1.1 KiB | 36 | 29 |
| compress.c | H A D | 12-Mar-2020 | 57.7 KiB | 1,863 | 1,398 |
| compress.h | H A D | 12-Mar-2020 | 1.5 KiB | 58 | 38 |
| concordance.c | H A D | 30-May-2020 | 75.2 KiB | 1,866 | 1,579 |
| concordance.h | H A D | 29-May-2020 | 2.2 KiB | 66 | 47 |
| config.h.in | H A D | 17-Sep-2020 | 9.3 KiB | 352 | 244 |
| cpuid.c | H A D | 18-Jun-2020 | 6.1 KiB | 204 | 167 |
| cpuid.h | H A D | 12-Mar-2020 | 328 | 12 | 7 |
| datadir.c | H A D | 12-Mar-2020 | 12.3 KiB | 473 | 389 |
| datadir.h | H A D | 12-Mar-2020 | 717 | 26 | 19 |
| diag.c | H A D | 12-Mar-2020 | 23.2 KiB | 922 | 746 |
| diag.h | H A D | 12-Mar-2020 | 1.6 KiB | 62 | 51 |
| diagdef.h | H A D | 12-Mar-2020 | 284 | 20 | 14 |
| diagnostic.c | H A D | 12-Mar-2020 | 2.1 KiB | 74 | 62 |
| diagnostic.h | H A D | 12-Mar-2020 | 794 | 47 | 36 |
| diagpool.c | H A D | 12-Mar-2020 | 5.1 KiB | 227 | 176 |
| diagpool.h | H A D | 12-Mar-2020 | 661 | 33 | 25 |
| distant-dna.c | H A D | 03-Jun-2020 | 36.6 KiB | 908 | 757 |
| distant-dna.h | H A D | 03-Jun-2020 | 963 | 31 | 23 |
| distant-rna.c | H A D | 13-Sep-2020 | 96.5 KiB | 2,113 | 1,799 |
| distant-rna.h | H A D | 03-Jun-2020 | 1.4 KiB | 42 | 31 |
| doublelist.c | H A D | 12-Mar-2020 | 3.2 KiB | 227 | 186 |
| doublelist.h | H A D | 12-Mar-2020 | 903 | 35 | 30 |
| dynprog.c | H A D | 18-Jun-2020 | 55 KiB | 1,871 | 1,496 |
| dynprog.h | H A D | 12-Mar-2020 | 8.1 KiB | 269 | 183 |
| dynprog_cdna.c | H A D | 12-Mar-2020 | 45.1 KiB | 1,314 | 988 |
| dynprog_cdna.h | H A D | 12-Mar-2020 | 935 | 34 | 25 |
| dynprog_end.c | H A D | 05-Apr-2020 | 109.8 KiB | 3,208 | 2,608 |
| dynprog_end.h | H A D | 12-Mar-2020 | 5 KiB | 121 | 101 |
| dynprog_genome.c | H A D | 12-Mar-2020 | 141.8 KiB | 3,879 | 3,217 |
| dynprog_genome.h | H A D | 12-Mar-2020 | 1.2 KiB | 38 | 28 |
| dynprog_simd.c | H A D | 12-Mar-2020 | 330.4 KiB | 9,687 | 7,713 |
| dynprog_simd.h | H A D | 12-Mar-2020 | 5.7 KiB | 125 | 105 |
| dynprog_single.c | H A D | 12-Mar-2020 | 45.5 KiB | 1,437 | 1,162 |
| dynprog_single.h | H A D | 12-Mar-2020 | 2.1 KiB | 61 | 48 |
| except.c | H A D | 12-Mar-2020 | 3.1 KiB | 156 | 128 |
| except.h | H A D | 12-Mar-2020 | 2 KiB | 100 | 79 |
| extension-search.c | H A D | 22-Jun-2020 | 55.3 KiB | 1,749 | 1,365 |
| extension-search.h | H A D | 01-Jun-2020 | 1.9 KiB | 74 | 53 |
| fastlog.h | H A D | 12-Mar-2020 | 4.4 KiB | 125 | 64 |
| filestring.c | H A D | 12-Mar-2020 | 14.7 KiB | 681 | 534 |
| filestring.h | H A D | 12-Mar-2020 | 1.2 KiB | 65 | 52 |
| filesuffix.h | H A D | 12-Mar-2020 | 522 | 25 | 14 |
| fopen.c | H A D | 12-Mar-2020 | 1 KiB | 42 | 32 |
| fopen.h | H A D | 12-Mar-2020 | 977 | 35 | 27 |
| gbuffer.c | H A D | 12-Mar-2020 | 1.4 KiB | 90 | 67 |
| gbuffer.h | H A D | 12-Mar-2020 | 492 | 32 | 22 |
| genome-write.c | H A D | 12-Mar-2020 | 28.1 KiB | 875 | 716 |
| genome-write.h | H A D | 12-Mar-2020 | 519 | 19 | 14 |
| genome.c | H A D | 22-Jun-2020 | 806.2 KiB | 11,523 | 11,000 |
| genome.h | H A D | 22-Jun-2020 | 3.4 KiB | 104 | 92 |
| genome128_consec.c | H A D | 15-Jun-2020 | 136 KiB | 4,197 | 3,313 |
| genome128_consec.h | H A D | 12-Mar-2020 | 801 | 25 | 19 |
| genome128_hr.c | H A D | 29-Jun-2020 | 249.6 KiB | 7,631 | 5,984 |
| genome128_hr.h | H A D | 29-Jun-2020 | 2.4 KiB | 59 | 50 |
| genome_sites.c | H A D | 12-Mar-2020 | 2.4 MiB | 26,538 | 26,213 |
| genome_sites.h | H A D | 12-Mar-2020 | 2.1 KiB | 65 | 47 |
| genomicpos.c | H A D | 12-Mar-2020 | 2.9 KiB | 176 | 145 |
| genomicpos.h | H A D | 12-Mar-2020 | 1 KiB | 55 | 45 |
| get-genome.c | H A D | 02-Jun-2020 | 61.5 KiB | 1,899 | 1,584 |
| getline.c | H A D | 12-Mar-2020 | 4.6 KiB | 228 | 171 |
| getline.h | H A D | 12-Mar-2020 | 544 | 37 | 27 |
| getopt.c | H A D | 12-Mar-2020 | 33.3 KiB | 1,263 | 824 |
| getopt.h | H A D | 12-Mar-2020 | 6.3 KiB | 182 | 61 |
| getopt1.c | H A D | 12-Mar-2020 | 4.5 KiB | 197 | 131 |
| gmap.c | H A D | 03-Jun-2020 | 275.5 KiB | 7,760 | 6,509 |
| gmap_select.c | H A D | 12-Mar-2020 | 7.5 KiB | 247 | 219 |
| gmapindex.c | H A D | 22-Apr-2020 | 61.6 KiB | 1,980 | 1,573 |
| gmapl_select.c | H A D | 12-Mar-2020 | 7.5 KiB | 247 | 219 |
| gregion.c | H A D | 12-Mar-2020 | 43.3 KiB | 1,726 | 1,298 |
| gregion.h | H A D | 12-Mar-2020 | 2.3 KiB | 123 | 82 |
| gsnap.c | H A D | 29-Jun-2020 | 168.7 KiB | 4,720 | 3,867 |
| gsnap_select.c | H A D | 12-Mar-2020 | 7.5 KiB | 247 | 219 |
| gsnapl_select.c | H A D | 12-Mar-2020 | 7.5 KiB | 247 | 219 |
| hitlistpool.c | H A D | 12-Mar-2020 | 4 KiB | 198 | 150 |
| hitlistpool.h | H A D | 12-Mar-2020 | 1.2 KiB | 61 | 40 |
| iit-read-univ.c | H A D | 03-Jun-2020 | 68.7 KiB | 2,379 | 1,826 |
| iit-read-univ.h | H A D | 02-Jun-2020 | 4 KiB | 134 | 121 |
| iit-read.c | H A D | 10-Apr-2020 | 212.2 KiB | 7,668 | 6,231 |
| iit-read.h | H A D | 13-Mar-2020 | 8.2 KiB | 259 | 228 |
| iit-write-univ.c | H A D | 12-Mar-2020 | 18.6 KiB | 691 | 517 |
| iit-write-univ.h | H A D | 12-Mar-2020 | 457 | 19 | 13 |
| iit-write.c | H A D | 12-Mar-2020 | 45.3 KiB | 1,654 | 1,286 |
| iit-write.h | H A D | 12-Mar-2020 | 891 | 31 | 24 |
| iit_dump.c | H A D | 12-Mar-2020 | 6.7 KiB | 270 | 208 |
| iit_get.c | H A D | 22-Apr-2020 | 38.7 KiB | 1,373 | 1,138 |
| iit_store.c | H A D | 29-May-2020 | 39.8 KiB | 1,294 | 1,066 |
| iitdef.h | H A D | 12-Mar-2020 | 3.5 KiB | 144 | 98 |
| inbuffer.c | H A D | 12-Mar-2020 | 27.3 KiB | 952 | 749 |
| inbuffer.h | H A D | 12-Mar-2020 | 2.5 KiB | 131 | 108 |
| indel.c | H A D | 29-Jun-2020 | 45.9 KiB | 1,350 | 1,119 |
| indel.h | H A D | 22-Jun-2020 | 2.6 KiB | 67 | 55 |
| indexdb-cat.c | H A D | 03-Jun-2020 | 31.4 KiB | 953 | 771 |
| indexdb-write.c | H A D | 13-Mar-2020 | 88.8 KiB | 3,022 | 2,660 |
| indexdb-write.h | H A D | 12-Mar-2020 | 2.6 KiB | 97 | 81 |
| indexdb.c | H A D | 03-Jun-2020 | 92.7 KiB | 3,092 | 2,524 |
| indexdb.h | H A D | 03-Jun-2020 | 4.7 KiB | 184 | 153 |
| indexdbdef.h | H A D | 12-Mar-2020 | 1.8 KiB | 91 | 66 |
| intersect-large.c | H A D | 13-May-2020 | 28.6 KiB | 826 | 685 |
| intersect-large.h | H A D | 12-Mar-2020 | 1.5 KiB | 51 | 40 |
| intersect.c | H A D | 25-Apr-2020 | 35.3 KiB | 1,166 | 965 |
| intersect.h | H A D | 12-Mar-2020 | 1.6 KiB | 61 | 48 |
| interval.c | H A D | 12-Mar-2020 | 7.8 KiB | 386 | 308 |
| interval.h | H A D | 12-Mar-2020 | 1.6 KiB | 81 | 65 |
| intlist.c | H A D | 12-Mar-2020 | 11.8 KiB | 729 | 582 |
| intlist.h | H A D | 12-Mar-2020 | 3.8 KiB | 197 | 162 |
| intlistpool.c | H A D | 12-Mar-2020 | 3.1 KiB | 160 | 123 |
| intlistpool.h | H A D | 12-Mar-2020 | 682 | 31 | 24 |
| intron.c | H A D | 12-Mar-2020 | 8.5 KiB | 318 | 283 |
| intron.h | H A D | 12-Mar-2020 | 2.2 KiB | 79 | 63 |
| junction.c | H A D | 03-Jun-2020 | 9.9 KiB | 445 | 344 |
| junction.h | H A D | 03-Jun-2020 | 2.1 KiB | 91 | 73 |
| kmer-search.c | H A D | 03-Jun-2020 | 264.9 KiB | 6,903 | 5,719 |
| kmer-search.h | H A D | 01-Jun-2020 | 3.1 KiB | 73 | 59 |
| knownsplicing.c | H A D | 12-Mar-2020 | 16.7 KiB | 589 | 453 |
| knownsplicing.h | H A D | 12-Mar-2020 | 775 | 27 | 18 |
| ladder.c | H A D | 28-May-2020 | 19.3 KiB | 793 | 625 |
| ladder.h | H A D | 28-May-2020 | 1.2 KiB | 53 | 45 |
| list.c | H A D | 12-Mar-2020 | 6.5 KiB | 455 | 370 |
| list.h | H A D | 12-Mar-2020 | 3.6 KiB | 183 | 142 |
| listpool.c | H A D | 12-Mar-2020 | 2.9 KiB | 148 | 108 |
| listpool.h | H A D | 12-Mar-2020 | 532 | 28 | 21 |
| littleendian.c | H A D | 12-Mar-2020 | 1.6 KiB | 68 | 52 |
| littleendian.h | H A D | 12-Mar-2020 | 1.9 KiB | 56 | 44 |
| mapq.c | H A D | 12-Mar-2020 | 9.2 KiB | 278 | 229 |
| mapq.h | H A D | 12-Mar-2020 | 609 | 25 | 17 |
| master.c | H A D | 12-Mar-2020 | 14.5 KiB | 511 | 393 |
| master.h | H A D | 12-Mar-2020 | 1.3 KiB | 66 | 48 |
| match.c | H A D | 12-Mar-2020 | 6.7 KiB | 307 | 250 |
| match.h | H A D | 12-Mar-2020 | 1.3 KiB | 67 | 54 |
| matchdef.h | H A D | 12-Mar-2020 | 472 | 26 | 19 |
| matchpool.c | H A D | 12-Mar-2020 | 6.5 KiB | 285 | 225 |
| matchpool.h | H A D | 12-Mar-2020 | 881 | 39 | 33 |
| maxent.c | H A D | 12-Mar-2020 | 1.6 MiB | 99,556 | 99,418 |
| maxent.h | H A D | 12-Mar-2020 | 1 KiB | 36 | 28 |
| maxent_hr.c | H A D | 12-Mar-2020 | 2.9 MiB | 27,499 | 27,011 |
| maxent_hr.h | H A D | 12-Mar-2020 | 631 | 27 | 16 |
| md5.c | H A D | 12-Mar-2020 | 8.3 KiB | 287 | 220 |
| md5.h | H A D | 12-Mar-2020 | 285 | 15 | 9 |
| mdprint.c | H A D | 04-Jun-2020 | 11.5 KiB | 350 | 282 |
| mdprint.h | H A D | 04-Jun-2020 | 449 | 17 | 11 |
| mem.c | H A D | 01-Jun-2020 | 33.2 KiB | 1,300 | 1,093 |
| mem.h | H A D | 01-Jun-2020 | 6.9 KiB | 204 | 159 |
| merge-diagonals-heap.c | H A D | 21-Apr-2020 | 8.3 KiB | 336 | 261 |
| merge-diagonals-heap.h | H A D | 12-Mar-2020 | 781 | 27 | 16 |
| merge-diagonals-simd-uint4.c | H A D | 20-May-2020 | 14 KiB | 508 | 390 |
| merge-diagonals-simd-uint4.h | H A D | 12-Mar-2020 | 525 | 22 | 14 |
| merge-diagonals-simd-uint8.c | H A D | 21-Apr-2020 | 14.2 KiB | 508 | 386 |
| merge-diagonals-simd-uint8.h | H A D | 12-Mar-2020 | 822 | 27 | 16 |
| merge-uint4.c | H A D | 12-Mar-2020 | 16.7 KiB | 541 | 396 |
| merge-uint4.h | H A D | 12-Mar-2020 | 350 | 15 | 9 |
| merge-uint8.c | H A D | 12-Mar-2020 | 12.9 KiB | 421 | 290 |
| merge-uint8.h | H A D | 12-Mar-2020 | 394 | 17 | 12 |
| method.c | H A D | 12-Mar-2020 | 2.7 KiB | 88 | 74 |
| method.h | H A D | 12-Mar-2020 | 1.4 KiB | 38 | 26 |
| mode.h | H A D | 12-Mar-2020 | 237 | 9 | 4 |
| mpidebug.c | H A D | 12-Mar-2020 | 3.6 KiB | 130 | 106 |
| mpidebug.h | H A D | 12-Mar-2020 | 1.8 KiB | 52 | 31 |
| oligo.c | H A D | 12-Mar-2020 | 17.8 KiB | 491 | 360 |
| oligo.h | H A D | 12-Mar-2020 | 971 | 30 | 22 |
| oligoindex_hr.c | H A D | 03-Jun-2020 | 1.3 MiB | 34,363 | 28,827 |
| oligoindex_hr.h | H A D | 12-Mar-2020 | 3.4 KiB | 139 | 102 |
| orderstat.c | H A D | 12-Mar-2020 | 5.6 KiB | 318 | 228 |
| orderstat.h | H A D | 12-Mar-2020 | 493 | 17 | 13 |
| outbuffer.c | H A D | 12-Mar-2020 | 32.2 KiB | 1,305 | 1,023 |
| outbuffer.h | H A D | 12-Mar-2020 | 2.2 KiB | 94 | 68 |
| output.c | H A D | 22-Apr-2020 | 37.1 KiB | 1,064 | 871 |
| output.h | H A D | 22-Apr-2020 | 2.1 KiB | 63 | 49 |
| pair.c | H A D | 10-Jul-2020 | 264 KiB | 10,538 | 8,356 |
| pair.h | H A D | 14-Apr-2020 | 13.2 KiB | 371 | 313 |
| pairdef.h | H A D | 12-Mar-2020 | 1.4 KiB | 55 | 38 |
| pairpool.c | H A D | 18-Jun-2020 | 33.5 KiB | 1,249 | 1,001 |
| pairpool.h | H A D | 12-Mar-2020 | 2.3 KiB | 73 | 64 |
| parserange.c | H A D | 12-Mar-2020 | 23 KiB | 738 | 590 |
| parserange.h | H A D | 12-Mar-2020 | 1.3 KiB | 43 | 31 |
| path-solve.c | H A D | 13-Sep-2020 | 171.4 KiB | 4,045 | 3,259 |
| path-solve.h | H A D | 01-Jun-2020 | 2 KiB | 57 | 46 |
| pbinom.c | H A D | 12-Mar-2020 | 50.1 KiB | 1,688 | 1,320 |
| pbinom.h | H A D | 12-Mar-2020 | 204 | 13 | 7 |
| popcount.c | H A D | 12-Mar-2020 | 392.7 KiB | 4,121 | 4,116 |
| popcount.h | H A D | 12-Mar-2020 | 639 | 22 | 15 |
| reader.c | H A D | 12-Mar-2020 | 5.1 KiB | 269 | 175 |
| reader.h | H A D | 12-Mar-2020 | 942 | 51 | 38 |
| record.h | H A D | 21-Apr-2020 | 553 | 31 | 23 |
| regiondb-write.c | H A D | 05-Apr-2020 | 17 KiB | 669 | 558 |
| regiondb-write.h | H A D | 13-Mar-2020 | 828 | 32 | 24 |
| regiondb.c | H A D | 20-May-2020 | 56.2 KiB | 1,916 | 1,449 |
| regiondb.h | H A D | 21-Apr-2020 | 1.9 KiB | 71 | 53 |
| regiondbdef.h | H A D | 13-Mar-2020 | 1.8 KiB | 74 | 38 |
| request.c | H A D | 12-Mar-2020 | 1.3 KiB | 89 | 70 |
| request.h | H A D | 12-Mar-2020 | 605 | 41 | 28 |
| result.c | H A D | 12-Mar-2020 | 3.7 KiB | 181 | 143 |
| result.h | H A D | 12-Mar-2020 | 994 | 42 | 32 |
| resulthr.c | H A D | 12-Mar-2020 | 9 KiB | 339 | 283 |
| resulthr.h | H A D | 12-Mar-2020 | 1.9 KiB | 56 | 44 |
| sam_sort.c | H A D | 12-Mar-2020 | 46.5 KiB | 1,589 | 1,240 |
| samflags.h | H A D | 12-Mar-2020 | 4.6 KiB | 162 | 106 |
| samheader.c | H A D | 12-Mar-2020 | 9 KiB | 340 | 268 |
| samheader.h | H A D | 12-Mar-2020 | 907 | 45 | 34 |
| samprint.c | H A D | 04-Jun-2020 | 101.4 KiB | 2,593 | 1,972 |
| samprint.h | H A D | 04-Jun-2020 | 3 KiB | 67 | 52 |
| samread.c | H A D | 12-Mar-2020 | 45.8 KiB | 1,891 | 1,458 |
| samread.h | H A D | 12-Mar-2020 | 1.3 KiB | 41 | 28 |
| scores.h | H A D | 12-Mar-2020 | 346 | 19 | 13 |
| sedgesort.c | H A D | 12-Mar-2020 | 11.4 KiB | 565 | 427 |
| sedgesort.h | H A D | 12-Mar-2020 | 476 | 21 | 14 |
| segment-search.c | H A D | 28-May-2020 | 46.1 KiB | 1,429 | 1,157 |
| segment-search.h | H A D | 28-May-2020 | 3.3 KiB | 112 | 91 |
| segmentpos.c | H A D | 12-Mar-2020 | 7.1 KiB | 317 | 260 |
| segmentpos.h | H A D | 12-Mar-2020 | 1.3 KiB | 52 | 44 |
| semaphore.c | H A D | 12-Mar-2020 | 2.1 KiB | 105 | 74 |
| semaphore.h | H A D | 12-Mar-2020 | 801 | 46 | 29 |
| sense.h | H A D | 12-Mar-2020 | 359 | 17 | 10 |
| separator.h | H A D | 12-Mar-2020 | 143 | 9 | 4 |
| sequence.c | H A D | 12-Mar-2020 | 44.3 KiB | 2,024 | 1,607 |
| sequence.h | H A D | 12-Mar-2020 | 3 KiB | 148 | 122 |
| shortread.c | H A D | 12-Mar-2020 | 164.1 KiB | 6,098 | 5,006 |
| shortread.h | H A D | 12-Mar-2020 | 6.5 KiB | 236 | 197 |
| simplepair.c | H A D | 29-May-2020 | 48.1 KiB | 1,854 | 1,420 |
| simplepair.h | H A D | 29-May-2020 | 2.3 KiB | 78 | 58 |
| smooth.c | H A D | 12-Mar-2020 | 34.5 KiB | 1,242 | 993 |
| smooth.h | H A D | 12-Mar-2020 | 594 | 21 | 15 |
| snpindex.c | H A D | 02-Jun-2020 | 55.5 KiB | 1,701 | 1,411 |
| splice.c | H A D | 15-Jun-2020 | 119.7 KiB | 2,937 | 2,501 |
| splice.h | H A D | 03-Jun-2020 | 3.7 KiB | 112 | 83 |
| splicestringpool.c | H A D | 12-Mar-2020 | 4.6 KiB | 209 | 154 |
| splicestringpool.h | H A D | 12-Mar-2020 | 837 | 39 | 29 |
| splicetrie.c | H A D | 22-Apr-2020 | 33.1 KiB | 850 | 734 |
| splicetrie.h | H A D | 22-Apr-2020 | 2.7 KiB | 70 | 55 |
| splicetrie_build.c | H A D | 12-Mar-2020 | 97 KiB | 3,400 | 2,871 |
| splicetrie_build.h | H A D | 12-Mar-2020 | 2.7 KiB | 76 | 60 |
| stage1.c | H A D | 12-Mar-2020 | 134.5 KiB | 4,271 | 3,445 |
| stage1.h | H A D | 12-Mar-2020 | 1.3 KiB | 49 | 38 |
| stage1hr.c | H A D | 29-Jun-2020 | 133.6 KiB | 3,113 | 2,398 |
| stage1hr.h | H A D | 29-Jun-2020 | 6 KiB | 162 | 113 |
| stage2.c | H A D | 18-Jun-2020 | 253.1 KiB | 7,624 | 6,122 |
| stage2.h | H A D | 12-Mar-2020 | 3.2 KiB | 100 | 81 |
| stage3.c | H A D | 18-Jun-2020 | 641.8 KiB | 18,970 | 15,304 |
| stage3.h | H A D | 22-Apr-2020 | 16 KiB | 455 | 407 |
| stage3hr.c | H A D | 13-Sep-2020 | 543.5 KiB | 15,121 | 12,116 |
| stage3hr.h | H A D | 29-Jun-2020 | 15.6 KiB | 485 | 419 |
| stage3hrdef.h | H A D | 29-Jun-2020 | 9.4 KiB | 253 | 105 |
| stopwatch.c | H A D | 12-Mar-2020 | 2 KiB | 115 | 88 |
| stopwatch.h | H A D | 12-Mar-2020 | 316 | 21 | 14 |
| substring.c | H A D | 13-Sep-2020 | 173.5 KiB | 5,646 | 4,406 |
| substring.h | H A D | 13-Sep-2020 | 13.5 KiB | 403 | 342 |
| table.c | H A D | 12-Mar-2020 | 7 KiB | 334 | 274 |
| table.h | H A D | 12-Mar-2020 | 1 KiB | 46 | 39 |
| tableint.c | H A D | 12-Mar-2020 | 5.3 KiB | 253 | 216 |
| tableint.h | H A D | 12-Mar-2020 | 825 | 35 | 30 |
| tableuint.c | H A D | 12-Mar-2020 | 5.5 KiB | 253 | 216 |
| tableuint.h | H A D | 12-Mar-2020 | 893 | 35 | 30 |
| tableuint8.c | H A D | 12-Mar-2020 | 5.7 KiB | 267 | 224 |
| tableuint8.h | H A D | 12-Mar-2020 | 876 | 37 | 31 |
| terminal.c | H A D | 13-Sep-2020 | 18.9 KiB | 530 | 419 |
| terminal.h | H A D | 03-Jun-2020 | 1.3 KiB | 41 | 31 |
| transcript.c | H A D | 31-May-2020 | 14.8 KiB | 688 | 563 |
| transcript.h | H A D | 22-Apr-2020 | 1.6 KiB | 64 | 47 |
| transcriptome.c | H A D | 03-Jun-2020 | 7.4 KiB | 286 | 226 |
| transcriptome.h | H A D | 18-Apr-2020 | 712 | 27 | 20 |
| translation.c | H A D | 12-Mar-2020 | 65.5 KiB | 2,499 | 2,071 |
| translation.h | H A D | 12-Mar-2020 | 1.2 KiB | 42 | 31 |
| trindex.c | H A D | 18-Apr-2020 | 10.5 KiB | 358 | 250 |
| types.h | H A D | 12-Mar-2020 | 4.3 KiB | 162 | 83 |
| uint8list.c | H A D | 13-Mar-2020 | 5.3 KiB | 332 | 271 |
| uint8list.h | H A D | 13-Mar-2020 | 2.4 KiB | 138 | 116 |
| uint8listpool.c | H A D | 12-Mar-2020 | 3.2 KiB | 159 | 123 |
| uint8listpool.h | H A D | 12-Mar-2020 | 726 | 31 | 24 |
| uint8table_rh.c | H A D | 12-Mar-2020 | 7.2 KiB | 312 | 232 |
| uint8table_rh.h | H A D | 12-Mar-2020 | 852 | 50 | 31 |
| uintlist.c | H A D | 12-Mar-2020 | 5.4 KiB | 333 | 272 |
| uintlist.h | H A D | 12-Mar-2020 | 2.9 KiB | 147 | 116 |
| uintlistpool.c | H A D | 12-Mar-2020 | 3.2 KiB | 160 | 123 |
| uintlistpool.h | H A D | 12-Mar-2020 | 717 | 31 | 24 |
| uinttable_rh.c | H A D | 12-Mar-2020 | 7.8 KiB | 342 | 256 |
| uinttable_rh.h | H A D | 12-Mar-2020 | 714 | 41 | 26 |
| univcoord.h | H A D | 12-Mar-2020 | 4 KiB | 105 | 92 |
| univdiag.c | H A D | 16-Apr-2020 | 3.6 KiB | 203 | 155 |
| univdiag.h | H A D | 16-Apr-2020 | 733 | 39 | 28 |
| univdiagdef.h | H A D | 12-Mar-2020 | 699 | 28 | 13 |
| univdiagpool.c | H A D | 12-Mar-2020 | 6.3 KiB | 258 | 199 |
| univdiagpool.h | H A D | 12-Mar-2020 | 800 | 35 | 27 |
| univinterval.c | H A D | 12-Mar-2020 | 7.2 KiB | 349 | 281 |
| univinterval.h | H A D | 12-Mar-2020 | 1.7 KiB | 80 | 64 |