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Makefile.amH A D17-Sep-202047.8 KiB946743

Makefile.inH A D17-Sep-20206.2 MiB51,82345,255

access.cH A D10-Apr-202034.3 KiB1,3801,073

access.hH A D10-Apr-20202.1 KiB8562

assert.cH A D12-Mar-2020244 176

assert.hH A D12-Mar-2020334 1811

atoi.cH A D13-Mar-2020929.6 KiB16,45416,431

atoi.hH A D13-Mar-2020240 148

atoiindex.cH A D03-Jun-202038.3 KiB1,216999

bigendian.cH A D12-Mar-202011.9 KiB551423

bigendian.hH A D12-Mar-20203.1 KiB10888

bitpack64-access.cH A D12-Mar-202073.6 KiB3,5042,482

bitpack64-access.hH A D12-Mar-2020675 2415

bitpack64-incr.cH A D12-Mar-2020193.2 KiB10,1227,606

bitpack64-incr.hH A D12-Mar-2020862 3120

bitpack64-read.cH A D12-Mar-2020427.6 KiB15,60511,703

bitpack64-read.hH A D12-Mar-2020937 3523

bitpack64-readtwo.cH A D12-Mar-2020406.8 KiB14,88010,344

bitpack64-readtwo.hH A D12-Mar-2020391 1610

bitpack64-write.cH A D12-Mar-2020198.3 KiB6,0474,483

bitpack64-write.hH A D12-Mar-20201.1 KiB3025

block.cH A D12-Mar-202011.1 KiB456372

block.hH A D12-Mar-20201.4 KiB6755

bool.hH A D12-Mar-2020264 189

boyer-moore.cH A D12-Mar-202015.7 KiB590504

boyer-moore.hH A D12-Mar-2020637 2316

bzip2.cH A D12-Mar-20202.6 KiB162130

bzip2.hH A D12-Mar-2020366 2717

cellpool.cH A D12-Mar-20204.5 KiB212158

cellpool.hH A D12-Mar-2020779 4433

changepoint.cH A D12-Mar-20209.7 KiB354266

changepoint.hH A D12-Mar-2020327 137

chimera.cH A D12-Mar-202039.4 KiB1,2111,010

chimera.hH A D12-Mar-20202.5 KiB7564

chrnum.cH A D12-Mar-20202 KiB9679

chrnum.hH A D21-Apr-2020682 2620

chrom.cH A D12-Mar-20209.3 KiB388297

chrom.hH A D12-Mar-20201.2 KiB5343

cigar.cH A D04-Jun-202087.3 KiB2,3651,907

cigar.hH A D04-Jun-20201.6 KiB4435

cmet.cH A D13-Mar-2020929.6 KiB16,45716,431

cmet.hH A D13-Mar-2020240 148

cmetindex.cH A D03-Jun-202042.1 KiB1,3561,111

comp.hH A D12-Mar-2020809 3724

complement.hH A D12-Mar-20201.9 KiB398

compress-write.cH A D03-Jun-202029.5 KiB1,079864

compress-write.hH A D05-Apr-20201.1 KiB3629

compress.cH A D12-Mar-202057.7 KiB1,8631,398

compress.hH A D12-Mar-20201.5 KiB5838

concordance.cH A D30-May-202075.2 KiB1,8661,579

concordance.hH A D29-May-20202.2 KiB6647

config.h.inH A D17-Sep-20209.3 KiB352244

cpuid.cH A D18-Jun-20206.1 KiB204167

cpuid.hH A D12-Mar-2020328 127

datadir.cH A D12-Mar-202012.3 KiB473389

datadir.hH A D12-Mar-2020717 2619

diag.cH A D12-Mar-202023.2 KiB922746

diag.hH A D12-Mar-20201.6 KiB6251

diagdef.hH A D12-Mar-2020284 2014

diagnostic.cH A D12-Mar-20202.1 KiB7462

diagnostic.hH A D12-Mar-2020794 4736

diagpool.cH A D12-Mar-20205.1 KiB227176

diagpool.hH A D12-Mar-2020661 3325

distant-dna.cH A D03-Jun-202036.6 KiB908757

distant-dna.hH A D03-Jun-2020963 3123

distant-rna.cH A D13-Sep-202096.5 KiB2,1131,799

distant-rna.hH A D03-Jun-20201.4 KiB4231

doublelist.cH A D12-Mar-20203.2 KiB227186

doublelist.hH A D12-Mar-2020903 3530

dynprog.cH A D18-Jun-202055 KiB1,8711,496

dynprog.hH A D12-Mar-20208.1 KiB269183

dynprog_cdna.cH A D12-Mar-202045.1 KiB1,314988

dynprog_cdna.hH A D12-Mar-2020935 3425

dynprog_end.cH A D05-Apr-2020109.8 KiB3,2082,608

dynprog_end.hH A D12-Mar-20205 KiB121101

dynprog_genome.cH A D12-Mar-2020141.8 KiB3,8793,217

dynprog_genome.hH A D12-Mar-20201.2 KiB3828

dynprog_simd.cH A D12-Mar-2020330.4 KiB9,6877,713

dynprog_simd.hH A D12-Mar-20205.7 KiB125105

dynprog_single.cH A D12-Mar-202045.5 KiB1,4371,162

dynprog_single.hH A D12-Mar-20202.1 KiB6148

except.cH A D12-Mar-20203.1 KiB156128

except.hH A D12-Mar-20202 KiB10079

extension-search.cH A D22-Jun-202055.3 KiB1,7491,365

extension-search.hH A D01-Jun-20201.9 KiB7453

fastlog.hH A D12-Mar-20204.4 KiB12564

filestring.cH A D12-Mar-202014.7 KiB681534

filestring.hH A D12-Mar-20201.2 KiB6552

filesuffix.hH A D12-Mar-2020522 2514

fopen.cH A D12-Mar-20201 KiB4232

fopen.hH A D12-Mar-2020977 3527

gbuffer.cH A D12-Mar-20201.4 KiB9067

gbuffer.hH A D12-Mar-2020492 3222

genome-write.cH A D12-Mar-202028.1 KiB875716

genome-write.hH A D12-Mar-2020519 1914

genome.cH A D22-Jun-2020806.2 KiB11,52311,000

genome.hH A D22-Jun-20203.4 KiB10492

genome128_consec.cH A D15-Jun-2020136 KiB4,1973,313

genome128_consec.hH A D12-Mar-2020801 2519

genome128_hr.cH A D29-Jun-2020249.6 KiB7,6315,984

genome128_hr.hH A D29-Jun-20202.4 KiB5950

genome_sites.cH A D12-Mar-20202.4 MiB26,53826,213

genome_sites.hH A D12-Mar-20202.1 KiB6547

genomicpos.cH A D12-Mar-20202.9 KiB176145

genomicpos.hH A D12-Mar-20201 KiB5545

get-genome.cH A D02-Jun-202061.5 KiB1,8991,584

getline.cH A D12-Mar-20204.6 KiB228171

getline.hH A D12-Mar-2020544 3727

getopt.cH A D12-Mar-202033.3 KiB1,263824

getopt.hH A D12-Mar-20206.3 KiB18261

getopt1.cH A D12-Mar-20204.5 KiB197131

gmap.cH A D03-Jun-2020275.5 KiB7,7606,509

gmap_select.cH A D12-Mar-20207.5 KiB247219

gmapindex.cH A D22-Apr-202061.6 KiB1,9801,573

gmapl_select.cH A D12-Mar-20207.5 KiB247219

gregion.cH A D12-Mar-202043.3 KiB1,7261,298

gregion.hH A D12-Mar-20202.3 KiB12382

gsnap.cH A D29-Jun-2020168.7 KiB4,7203,867

gsnap_select.cH A D12-Mar-20207.5 KiB247219

gsnapl_select.cH A D12-Mar-20207.5 KiB247219

hitlistpool.cH A D12-Mar-20204 KiB198150

hitlistpool.hH A D12-Mar-20201.2 KiB6140

iit-read-univ.cH A D03-Jun-202068.7 KiB2,3791,826

iit-read-univ.hH A D02-Jun-20204 KiB134121

iit-read.cH A D10-Apr-2020212.2 KiB7,6686,231

iit-read.hH A D13-Mar-20208.2 KiB259228

iit-write-univ.cH A D12-Mar-202018.6 KiB691517

iit-write-univ.hH A D12-Mar-2020457 1913

iit-write.cH A D12-Mar-202045.3 KiB1,6541,286

iit-write.hH A D12-Mar-2020891 3124

iit_dump.cH A D12-Mar-20206.7 KiB270208

iit_get.cH A D22-Apr-202038.7 KiB1,3731,138

iit_store.cH A D29-May-202039.8 KiB1,2941,066

iitdef.hH A D12-Mar-20203.5 KiB14498

inbuffer.cH A D12-Mar-202027.3 KiB952749

inbuffer.hH A D12-Mar-20202.5 KiB131108

indel.cH A D29-Jun-202045.9 KiB1,3501,119

indel.hH A D22-Jun-20202.6 KiB6755

indexdb-cat.cH A D03-Jun-202031.4 KiB953771

indexdb-write.cH A D13-Mar-202088.8 KiB3,0222,660

indexdb-write.hH A D12-Mar-20202.6 KiB9781

indexdb.cH A D03-Jun-202092.7 KiB3,0922,524

indexdb.hH A D03-Jun-20204.7 KiB184153

indexdbdef.hH A D12-Mar-20201.8 KiB9166

intersect-large.cH A D13-May-202028.6 KiB826685

intersect-large.hH A D12-Mar-20201.5 KiB5140

intersect.cH A D25-Apr-202035.3 KiB1,166965

intersect.hH A D12-Mar-20201.6 KiB6148

interval.cH A D12-Mar-20207.8 KiB386308

interval.hH A D12-Mar-20201.6 KiB8165

intlist.cH A D12-Mar-202011.8 KiB729582

intlist.hH A D12-Mar-20203.8 KiB197162

intlistpool.cH A D12-Mar-20203.1 KiB160123

intlistpool.hH A D12-Mar-2020682 3124

intron.cH A D12-Mar-20208.5 KiB318283

intron.hH A D12-Mar-20202.2 KiB7963

junction.cH A D03-Jun-20209.9 KiB445344

junction.hH A D03-Jun-20202.1 KiB9173

kmer-search.cH A D03-Jun-2020264.9 KiB6,9035,719

kmer-search.hH A D01-Jun-20203.1 KiB7359

knownsplicing.cH A D12-Mar-202016.7 KiB589453

knownsplicing.hH A D12-Mar-2020775 2718

ladder.cH A D28-May-202019.3 KiB793625

ladder.hH A D28-May-20201.2 KiB5345

list.cH A D12-Mar-20206.5 KiB455370

list.hH A D12-Mar-20203.6 KiB183142

listpool.cH A D12-Mar-20202.9 KiB148108

listpool.hH A D12-Mar-2020532 2821

littleendian.cH A D12-Mar-20201.6 KiB6852

littleendian.hH A D12-Mar-20201.9 KiB5644

mapq.cH A D12-Mar-20209.2 KiB278229

mapq.hH A D12-Mar-2020609 2517

master.cH A D12-Mar-202014.5 KiB511393

master.hH A D12-Mar-20201.3 KiB6648

match.cH A D12-Mar-20206.7 KiB307250

match.hH A D12-Mar-20201.3 KiB6754

matchdef.hH A D12-Mar-2020472 2619

matchpool.cH A D12-Mar-20206.5 KiB285225

matchpool.hH A D12-Mar-2020881 3933

maxent.cH A D12-Mar-20201.6 MiB99,55699,418

maxent.hH A D12-Mar-20201 KiB3628

maxent_hr.cH A D12-Mar-20202.9 MiB27,49927,011

maxent_hr.hH A D12-Mar-2020631 2716

md5.cH A D12-Mar-20208.3 KiB287220

md5.hH A D12-Mar-2020285 159

mdprint.cH A D04-Jun-202011.5 KiB350282

mdprint.hH A D04-Jun-2020449 1711

mem.cH A D01-Jun-202033.2 KiB1,3001,093

mem.hH A D01-Jun-20206.9 KiB204159

merge-diagonals-heap.cH A D21-Apr-20208.3 KiB336261

merge-diagonals-heap.hH A D12-Mar-2020781 2716

merge-diagonals-simd-uint4.cH A D20-May-202014 KiB508390

merge-diagonals-simd-uint4.hH A D12-Mar-2020525 2214

merge-diagonals-simd-uint8.cH A D21-Apr-202014.2 KiB508386

merge-diagonals-simd-uint8.hH A D12-Mar-2020822 2716

merge-uint4.cH A D12-Mar-202016.7 KiB541396

merge-uint4.hH A D12-Mar-2020350 159

merge-uint8.cH A D12-Mar-202012.9 KiB421290

merge-uint8.hH A D12-Mar-2020394 1712

method.cH A D12-Mar-20202.7 KiB8874

method.hH A D12-Mar-20201.4 KiB3826

mode.hH A D12-Mar-2020237 94

mpidebug.cH A D12-Mar-20203.6 KiB130106

mpidebug.hH A D12-Mar-20201.8 KiB5231

oligo.cH A D12-Mar-202017.8 KiB491360

oligo.hH A D12-Mar-2020971 3022

oligoindex_hr.cH A D03-Jun-20201.3 MiB34,36328,827

oligoindex_hr.hH A D12-Mar-20203.4 KiB139102

orderstat.cH A D12-Mar-20205.6 KiB318228

orderstat.hH A D12-Mar-2020493 1713

outbuffer.cH A D12-Mar-202032.2 KiB1,3051,023

outbuffer.hH A D12-Mar-20202.2 KiB9468

output.cH A D22-Apr-202037.1 KiB1,064871

output.hH A D22-Apr-20202.1 KiB6349

pair.cH A D10-Jul-2020264 KiB10,5388,356

pair.hH A D14-Apr-202013.2 KiB371313

pairdef.hH A D12-Mar-20201.4 KiB5538

pairpool.cH A D18-Jun-202033.5 KiB1,2491,001

pairpool.hH A D12-Mar-20202.3 KiB7364

parserange.cH A D12-Mar-202023 KiB738590

parserange.hH A D12-Mar-20201.3 KiB4331

path-solve.cH A D13-Sep-2020171.4 KiB4,0453,259

path-solve.hH A D01-Jun-20202 KiB5746

pbinom.cH A D12-Mar-202050.1 KiB1,6881,320

pbinom.hH A D12-Mar-2020204 137

popcount.cH A D12-Mar-2020392.7 KiB4,1214,116

popcount.hH A D12-Mar-2020639 2215

reader.cH A D12-Mar-20205.1 KiB269175

reader.hH A D12-Mar-2020942 5138

record.hH A D21-Apr-2020553 3123

regiondb-write.cH A D05-Apr-202017 KiB669558

regiondb-write.hH A D13-Mar-2020828 3224

regiondb.cH A D20-May-202056.2 KiB1,9161,449

regiondb.hH A D21-Apr-20201.9 KiB7153

regiondbdef.hH A D13-Mar-20201.8 KiB7438

request.cH A D12-Mar-20201.3 KiB8970

request.hH A D12-Mar-2020605 4128

result.cH A D12-Mar-20203.7 KiB181143

result.hH A D12-Mar-2020994 4232

resulthr.cH A D12-Mar-20209 KiB339283

resulthr.hH A D12-Mar-20201.9 KiB5644

sam_sort.cH A D12-Mar-202046.5 KiB1,5891,240

samflags.hH A D12-Mar-20204.6 KiB162106

samheader.cH A D12-Mar-20209 KiB340268

samheader.hH A D12-Mar-2020907 4534

samprint.cH A D04-Jun-2020101.4 KiB2,5931,972

samprint.hH A D04-Jun-20203 KiB6752

samread.cH A D12-Mar-202045.8 KiB1,8911,458

samread.hH A D12-Mar-20201.3 KiB4128

scores.hH A D12-Mar-2020346 1913

sedgesort.cH A D12-Mar-202011.4 KiB565427

sedgesort.hH A D12-Mar-2020476 2114

segment-search.cH A D28-May-202046.1 KiB1,4291,157

segment-search.hH A D28-May-20203.3 KiB11291

segmentpos.cH A D12-Mar-20207.1 KiB317260

segmentpos.hH A D12-Mar-20201.3 KiB5244

semaphore.cH A D12-Mar-20202.1 KiB10574

semaphore.hH A D12-Mar-2020801 4629

sense.hH A D12-Mar-2020359 1710

separator.hH A D12-Mar-2020143 94

sequence.cH A D12-Mar-202044.3 KiB2,0241,607

sequence.hH A D12-Mar-20203 KiB148122

shortread.cH A D12-Mar-2020164.1 KiB6,0985,006

shortread.hH A D12-Mar-20206.5 KiB236197

simplepair.cH A D29-May-202048.1 KiB1,8541,420

simplepair.hH A D29-May-20202.3 KiB7858

smooth.cH A D12-Mar-202034.5 KiB1,242993

smooth.hH A D12-Mar-2020594 2115

snpindex.cH A D02-Jun-202055.5 KiB1,7011,411

splice.cH A D15-Jun-2020119.7 KiB2,9372,501

splice.hH A D03-Jun-20203.7 KiB11283

splicestringpool.cH A D12-Mar-20204.6 KiB209154

splicestringpool.hH A D12-Mar-2020837 3929

splicetrie.cH A D22-Apr-202033.1 KiB850734

splicetrie.hH A D22-Apr-20202.7 KiB7055

splicetrie_build.cH A D12-Mar-202097 KiB3,4002,871

splicetrie_build.hH A D12-Mar-20202.7 KiB7660

stage1.cH A D12-Mar-2020134.5 KiB4,2713,445

stage1.hH A D12-Mar-20201.3 KiB4938

stage1hr.cH A D29-Jun-2020133.6 KiB3,1132,398

stage1hr.hH A D29-Jun-20206 KiB162113

stage2.cH A D18-Jun-2020253.1 KiB7,6246,122

stage2.hH A D12-Mar-20203.2 KiB10081

stage3.cH A D18-Jun-2020641.8 KiB18,97015,304

stage3.hH A D22-Apr-202016 KiB455407

stage3hr.cH A D13-Sep-2020543.5 KiB15,12112,116

stage3hr.hH A D29-Jun-202015.6 KiB485419

stage3hrdef.hH A D29-Jun-20209.4 KiB253105

stopwatch.cH A D12-Mar-20202 KiB11588

stopwatch.hH A D12-Mar-2020316 2114

substring.cH A D13-Sep-2020173.5 KiB5,6464,406

substring.hH A D13-Sep-202013.5 KiB403342

table.cH A D12-Mar-20207 KiB334274

table.hH A D12-Mar-20201 KiB4639

tableint.cH A D12-Mar-20205.3 KiB253216

tableint.hH A D12-Mar-2020825 3530

tableuint.cH A D12-Mar-20205.5 KiB253216

tableuint.hH A D12-Mar-2020893 3530

tableuint8.cH A D12-Mar-20205.7 KiB267224

tableuint8.hH A D12-Mar-2020876 3731

terminal.cH A D13-Sep-202018.9 KiB530419

terminal.hH A D03-Jun-20201.3 KiB4131

transcript.cH A D31-May-202014.8 KiB688563

transcript.hH A D22-Apr-20201.6 KiB6447

transcriptome.cH A D03-Jun-20207.4 KiB286226

transcriptome.hH A D18-Apr-2020712 2720

translation.cH A D12-Mar-202065.5 KiB2,4992,071

translation.hH A D12-Mar-20201.2 KiB4231

trindex.cH A D18-Apr-202010.5 KiB358250

types.hH A D12-Mar-20204.3 KiB16283

uint8list.cH A D13-Mar-20205.3 KiB332271

uint8list.hH A D13-Mar-20202.4 KiB138116

uint8listpool.cH A D12-Mar-20203.2 KiB159123

uint8listpool.hH A D12-Mar-2020726 3124

uint8table_rh.cH A D12-Mar-20207.2 KiB312232

uint8table_rh.hH A D12-Mar-2020852 5031

uintlist.cH A D12-Mar-20205.4 KiB333272

uintlist.hH A D12-Mar-20202.9 KiB147116

uintlistpool.cH A D12-Mar-20203.2 KiB160123

uintlistpool.hH A D12-Mar-2020717 3124

uinttable_rh.cH A D12-Mar-20207.8 KiB342256

uinttable_rh.hH A D12-Mar-2020714 4126

univcoord.hH A D12-Mar-20204 KiB10592

univdiag.cH A D16-Apr-20203.6 KiB203155

univdiag.hH A D16-Apr-2020733 3928

univdiagdef.hH A D12-Mar-2020699 2813

univdiagpool.cH A D12-Mar-20206.3 KiB258199

univdiagpool.hH A D12-Mar-2020800 3527

univinterval.cH A D12-Mar-20207.2 KiB349281

univinterval.hH A D12-Mar-20201.7 KiB8064