1 /* $Id: matchdef.h 157221 2015-01-22 18:38:57Z twu $ */
2 #ifndef MATCHDEF_INCLUDED
3 #define MATCHDEF_INCLUDED
4 
5 #include "bool.h"
6 #include "chrnum.h"
7 #include "genomicpos.h"
8 
9 #define T Match_T
10 struct T {
11   Univcoord_T position;
12   Chrnum_T chrnum;
13   Chrpos_T chrpos;
14   double weight;		/* equal to 1/nentries */
15   bool has_weight_p;
16   int querypos;
17   int npairings;		/* number of matchpairs made with
18 				   other matches */
19   bool forwardp;
20   bool fivep;
21 };
22 
23 #undef T
24 #endif
25 
26