| /dports/biology/ncbi-toolkit/ncbi/tools/ |
| H A D | xmlblast.c | 626 Boolean is_ooframe, ValNodePtr mask_loc) in BXMLGetHspFromSeqAlign()
796 Boolean is_ooframe, ValNodePtr mask_loc) in BXMLSeqAlignToHits()
902 Boolean is_ooframe, Boolean ungapped, in BXMLBuildOneIteration()
913 Boolean is_ooframe, Boolean ungapped, in BXMLBuildOneQueryIteration()
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| H A D | gapxdrop.h | 179 Boolean is_ooframe; /* Is this out_of_frame edit block? */ member
266 Boolean is_ooframe; member
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| H A D | blfmtutl.c | 1027 Boolean is_ungapped, Boolean is_ooframe, Boolean believe_query, in BlastPrintTabularResults()
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| H A D | blastdef.h | 1184 Boolean is_ooframe; /* Use Out-Of-Frame gapping algorithm */ member
1236 Boolean is_ooframe; member
1284 Boolean is_ooframe; member
1429 Boolean is_ooframe; /* Use Out-Of-Frame gapping algorithm */ member
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| H A D | blastool.c | 4412 Boolean is_ooframe) in BLASTCreateSappArray()
4498 Boolean is_ooframe, in BLASTFilterOverlapRegions()
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| H A D | blastutl.c | 8939 Boolean is_ooframe) in BLASTCheckHSPInclusion()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/api/ |
| H A D | blast_tabular.h | 94 Boolean is_ooframe; /**< TRUE if incremental ASN output is selected and member
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| H A D | blast_seqalign.c | 1252 Int4 subject_length, Boolean is_ooframe, in s_HSPListToSeqAlignGapped()
1292 Boolean is_gapped, Boolean is_ooframe, in BLAST_ResultsToSeqAlign()
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| H A D | blast_format.c | 428 Boolean is_ooframe, Boolean ungapped, in s_XMLBuildOneQueryIteration()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | blast_seqalign.cpp | 1463 Int4 query_length, Int4 subject_length, bool is_ooframe, in BLASTHspListToSeqAlign()
1551 bool is_ooframe, in BlastHitList2SeqAlign_OMF()
1758 bool is_ooframe, in s_BLAST_OneSubjectResults2CSeqAlign()
1902 bool is_ooframe, in s_BlastResults2SeqAlignSequenceCmp_OMF()
1947 bool is_ooframe, in s_BlastResults2SeqAlignDatabaseSearch_OMF()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | blast_seqalign.cpp | 1463 Int4 query_length, Int4 subject_length, bool is_ooframe, in BLASTHspListToSeqAlign()
1551 bool is_ooframe, in BlastHitList2SeqAlign_OMF()
1758 bool is_ooframe, in s_BLAST_OneSubjectResults2CSeqAlign()
1902 bool is_ooframe, in s_BlastResults2SeqAlignSequenceCmp_OMF()
1947 bool is_ooframe, in s_BlastResults2SeqAlignDatabaseSearch_OMF()
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| /dports/biology/ncbi-toolkit/ncbi/algo/blast/core/ |
| H A D | blast_util.c | 1269 Boolean is_ooframe, in BlastTargetTranslationNew()
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| H A D | blast_options.h | 435 Boolean is_ooframe; /**< Should out-of-frame gapping be used in a translated member
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| H A D | blast_gapalign.c | 4287 Boolean is_ooframe = score_params->options->is_ooframe; in BLAST_GappedAlignmentWithTraceback() local
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| H A D | blast_hits.c | 1216 Boolean is_ooframe, in Blast_HSPGetPartialSubjectTranslation()
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/core/ |
| H A D | blast_util.c | 1271 Boolean is_ooframe, in BlastTargetTranslationNew()
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| H A D | blast_gapalign.c | 4306 Boolean is_ooframe = score_params->options->is_ooframe; in BLAST_GappedAlignmentWithTraceback() local
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| H A D | blast_hits.c | 1241 Boolean is_ooframe, in Blast_HSPGetPartialSubjectTranslation()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/core/ |
| H A D | blast_util.c | 1269 Boolean is_ooframe, in BlastTargetTranslationNew()
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| H A D | blast_gapalign.c | 4306 Boolean is_ooframe = score_params->options->is_ooframe; in BLAST_GappedAlignmentWithTraceback() local
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| H A D | blast_hits.c | 1241 Boolean is_ooframe, in Blast_HSPGetPartialSubjectTranslation()
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/algo/blast/core/ |
| H A D | blast_options.h | 468 Boolean is_ooframe; /**< Should out-of-frame gapping be used in a translated member
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| /dports/biology/ncbi-toolkit/ncbi/network/blast3/client/ |
| H A D | objblst3.h | 151 Int4 is_ooframe; member
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/blast/core/ |
| H A D | blast_options.h | 468 Boolean is_ooframe; /**< Should out-of-frame gapping be used in a translated member
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