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Searched defs:listpool (Results 1 – 14 of 14) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dconcordance.c437 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_genome_plus()
568 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_genome_minus()
707 Listpool_T listpool, Hitlistpool_T hitlistpool, in Concordance_pair_up_genome()
976 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_distant_plus_plus()
1126 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_distant_minus_minus()
1275 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_distant_plus_minus()
1395 Listpool_T listpool, Hitlistpool_T hitlistpool) { in do_distant_minus_plus()
1523 Listpool_T listpool, Hitlistpool_T hitlistpool, in Concordance_pair_up_distant()
H A Dterminal.c64 Compress_T query_compress, Listpool_T listpool, in find_terminals()
284 int genestrand, Listpool_T listpool, in Terminal_solve_plus()
399 int genestrand, Listpool_T listpool, in Terminal_solve_minus()
H A Dpath-solve.c182 Listpool_T listpool) { in Path_copy_5()
211 Listpool_T listpool) { in Path_copy_3()
484 Listpool_T listpool, int sensedir) { in attach_qstart_diagonal()
1106 Listpool_T listpool, Univdiagpool_T univdiagpool, int sensedir, bool innerp) { in compute_qstart_paths()
1315 Listpool_T listpool, int sensedir, bool innerp) { in add_qstart_local()
1462 Listpool_T listpool, int sensedir) { in attach_qend_diagonal()
2098 Listpool_T listpool, Univdiagpool_T univdiagpool, int sensedir, bool innerp) { in compute_qend_paths()
2295 Listpool_T listpool, int sensedir, bool innerp) { in add_qend_local()
2449 Listpool_T listpool, Hitlistpool_T hitlistpool, Method_T method, int level) { in solve_via_segments_genome()
3326 Intlistpool_T intlistpool, Univcoordlistpool_T univcoordlistpool, Listpool_T listpool, in compute_qend_local()
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H A Ddistant-rna.c143 Compress_T query_compress, Listpool_T listpool, in find_spliceends_rna_plus()
659 Compress_T query_compress, Listpool_T listpool, in find_spliceends_rna_minus()
1202 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in find_splicepairs_rna()
1944 int genestrand, bool first_read_p, Listpool_T listpool, in Distant_rna_solve()
H A Dextension-search.c891 int nmismatches_allowed, int genestrand, Listpool_T listpool) { in get_elt_sets_queryfwd()
1146 int nmismatches_allowed, int genestrand, Listpool_T listpool) { in get_elt_sets_queryrev()
1401 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in process_seed()
1594 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in extend_seeds()
1704 Intlistpool_T intlistpool, Univcoordlistpool_T univcoordlistpool, Listpool_T listpool, in Extension_search()
H A Dstage1hr.c1059 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in single_read_search()
1428 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool) { in Stage1_single_read()
1649 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool) { in paired_read_segment_search()
2236 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool) { in paired_read()
2407 Listpool_T listpool, Hitlistpool_T hitlistpool) { in consolidate_paired_results()
2785 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool) { in Stage1_paired_read()
H A Ddistant-dna.c83 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in Distant_dna_solve()
H A Dkmer-search.c1157 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in single_hits_gplus()
1299 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in single_hits_gminus()
4607 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in Kmer_search_transcriptome_single()
5245 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in combine_ends_plus()
5774 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in combine_ends_minus()
6310 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in Kmer_search_genome_ends_exact()
6468 Listpool_T listpool, Hitlistpool_T hitlistpool, int level) { in Kmer_search_genome_ends_approx()
H A Djunction.c276 Junction_copy_list (List_T old, Listpool_T listpool) { in Junction_copy_list()
H A Dgsnap.c934 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in process_request()
1135 Listpool_T listpool; in single_thread() local
1326 Listpool_T listpool; in worker_thread() local
H A Dsegment-search.c1107 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in solve_all()
1356 Listpool_T listpool, Univdiagpool_T univdiagpool, Hitlistpool_T hitlistpool, in Segment_search_all()
H A Dstage3hr.c3336 Stage3end_copy (T old, Listpool_T listpool) { in Stage3end_copy()
3515 bool gplusp, int genestrand, int sensedir, Listpool_T listpool, in Stage3end_new_terminal()
3721 bool gplusp, int genestrand, int sensedir, Listpool_T listpool, Method_T method, int level) { in Stage3end_new_precomputed()
3970 bool splice5p_in, bool splice3p_in, Listpool_T listpool) { in Stage3end_nmatches_substrings()
4313 Listpool_T listpool, Method_T method, int level) { in Stage3end_new_substrings()
4992 Chrpos_T chrlength, Listpool_T listpool, Method_T method, int level) { in Stage3end_new_substitution()
5277 Listpool_T listpool, Method_T method, int level) { in Stage3end_new_splice()
5612 bool first_read_p, Listpool_T listpool, int level) { in Stage3end_new_distant()
11311 Listpool_T listpool, bool expect_concordant_p, bool transcriptome_guided_p) { in Stage3pair_new()
H A Dsubstring.c4255 Substring_sort_siteD_halves (List_T hitlist, Listpool_T listpool, bool ascendingp) { in Substring_sort_siteD_halves()
4308 Substring_sort_siteA_halves (List_T hitlist, Listpool_T listpool, bool ascendingp) { in Substring_sort_siteA_halves()
4361 Substring_sort_siteN_halves (List_T hitlist, Listpool_T listpool, bool ascendingp) { in Substring_sort_siteN_halves()
/dports/security/snort/snort-2.9.18/src/
H A Dsf_sdlist.c403 SDListItem listpool[1000]; in main() local