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Searched defs:loci (Results 1 – 25 of 113) sorted by relevance

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/dports/biology/mapm3/mapm3-3.0_1/mapm/
H A Dtwo_cmds.c77 int *loci=NULL, num_loci, *linkage_group=NULL, group_size, num_left; in group() local
145 int *loci=NULL, num_loci, num_left, *linkage_group=NULL, group_size; in haplotype() local
241 int *loci=NULL, num_loci, *changed=NULL, num_changed; in unhaplotype() local
321 int a, b, n, num_loci, *loci=NULL; in biglods() local
424 int *loci=NULL, num_loci, type, source; in lodtable() local
455 int i, j, a, b, num_trials, *try_me=NULL, num_loci, *loci=NULL; in pairwise() local
639 int i, num_loci, *loci=NULL, num_trips, num_groups, num_links; in three_point() local
770 int *loci=NULL, num_loci, *linkage_group=NULL, group_size, groups_done; in suggest_subset() local
H A Dtoplevel.h212 #define sort_loci(loci,num_loci) inv_isort(loci,num_loci) argument
254 #define for_all_3pt_seqs(loci,num,seq) \ argument
/dports/biology/star/STAR-2.7.9a/source/
H A DVariation.h19 uint* loci; //snp coordinates variable
/dports/biology/stacks/stacks-2.4/src/
H A Dexport_formats.cc218 SumstatsExport::write_batch(const vector<LocBin *> &loci) in write_batch()
341 HapstatsExport::write_batch(const vector<LocBin *> &loci) in write_batch()
865 GenotypesExport::write_batch(const vector<LocBin *> &loci) in write_batch()
945 MarkersExport::write_batch(const vector<LocBin *> &loci) in write_batch()
1013 FastaLociExport::write_batch(const vector<LocBin *> &loci) in write_batch()
1068 FastaRawExport::write_batch(const vector<LocBin *> &loci) in write_batch()
1145 FastaSamplesExport::write_batch(const vector<LocBin *> &loci) in write_batch()
1217 OrderableExport::write_batch(const vector<LocBin*> &loci) in write_batch()
1454 GenePopHapsExport::write_batch(const vector<LocBin*>& loci) in write_batch()
2374 int VcfHapsExport::write_batch(const vector<LocBin*>& loci){ in write_batch()
[all …]
/dports/math/vtk6/VTK-6.2.0/Common/Core/
H A DvtkVariantArray.cxx188 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
198 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
213 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
233 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
243 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
255 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
/dports/math/vtk9/VTK-9.1.0/Common/Core/
H A DvtkVariantArray.cxx194 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
204 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
219 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
239 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
249 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
261 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
/dports/math/vtk8/VTK-8.2.0/Common/Core/
H A DvtkVariantArray.cxx194 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
204 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
219 vtkIdType loci = i * this->NumberOfComponents; in SetTuple() local
239 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
249 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
261 vtkIdType loci = i * this->NumberOfComponents; in InsertTuple() local
/dports/science/rdkit/rdkit-Release_2021_03_5/Code/GraphMol/Depictor/
H A DtestDepictor.cpp140 RDGeom::Point3D loci = conf.getAtomPos(i); in testCollisions() local
385 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue248() local
417 RDGeom::Point3D loci = conf.getAtomPos(i); in testQueries() local
502 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2821647() local
516 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2821647() local
530 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2821647() local
544 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2821647() local
573 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2995724() local
594 RDGeom::Point3D loci = conf.getAtomPos(i); in testIssue2995724() local
/dports/net/vnstat/vnstat-2.8/src/
H A Dcfg.h7 int32_t *loci; member
/dports/devel/zpu-binutils/zpu-toolchain-1.0/toolchain/gdb/gdb/testsuite/gdb.trace/
H A Dcollection.c90 int loci = 12; in local_test_func() local
115 register int loci = 12; in reglocal_test_func() local
140 static int loci; in statlocal_test_func() local
/dports/devel/zpu-gcc/zpu-toolchain-1.0/toolchain/gdb/gdb/testsuite/gdb.trace/
H A Dcollection.c90 int loci = 12; in local_test_func() local
115 register int loci = 12; in reglocal_test_func() local
140 static int loci; in statlocal_test_func() local
/dports/devel/avr-gdb/gdb-7.3.1/gdb/testsuite/gdb.trace/
H A Dcollection.c100 int loci = 12; in local_test_func() local
126 register int loci = 12; in reglocal_test_func() local
151 static int loci; in statlocal_test_func() local
H A Dunavailable.cc212 int loci = 12; in local_test_func() local
241 register int loci = 12; in reglocal_test_func() local
269 static int loci; in statlocal_test_func() local
/dports/editors/texmacs/TeXmacs-1.99.4-src/src/Data/Observers/
H A Dlink.hpp56 list<observer> loci; member in link_repository_rep
/dports/devel/gdb761/gdb-7.6.1/gdb/testsuite/gdb.trace/
H A Dcollection.c100 int loci = 12; in local_test_func() local
126 register int loci = 12; in reglocal_test_func() local
151 static int loci; in statlocal_test_func() local
H A Dunavailable.cc211 int loci = 12; in local_test_func() local
240 register int loci = 12; in reglocal_test_func() local
268 static int loci; in statlocal_test_func() local
/dports/devel/gdb/gdb-11.1/gdb/testsuite/gdb.trace/
H A Dcollection.c117 int loci = 12; in local_test_func() local
143 register int loci = 12; in reglocal_test_func() local
168 static int loci; in statlocal_test_func() local
H A Dunavailable.cc211 int loci = 12; in local_test_func() local
240 register int loci = 12; in reglocal_test_func() local
268 static int loci; in statlocal_test_func() local
/dports/biology/gatk/gatk-4.2.0.0/src/test/java/org/broadinstitute/hellbender/tools/dragstr/
H A DDragstrLocusUnitTest.java40 final List<DragstrLocus> loci = randomLoci(); in testWriteRead() local
/dports/biology/lamarc/lamarc-2.1.8/src/convModel/
H A Dgc_structures.cpp186 gcIdVec loci = GetLocusIdsForRegionByCreation(regionId); in IsBlessedRegion() local
459 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in GetDisplayableLociFor() local
1682 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in GetLocusDisplayIndexOf() local
1710 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in RegionHasAnyLinkedLoci() local
1727 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in RegionHasAnyUnLinkedLoci() local
1744 gcIdVec loci = GetLocusIdsForRegionByCreation(regionId); in FragmentRegion() local
2157 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in GetLocusIdsForRegionByCreation() local
2175 const GCLocusInfoMap & loci = region.GetLocusInfoMap(); in GetLocusIdsForRegionByMapPosition() local
2305 GCStructures::RemoveLoci(objVector loci) in RemoveLoci()
2619 constObjVector loci = in VerifyLocusSeparations() local
[all …]
/dports/cad/netgen/netgen-6.2.2105/libsrc/meshing/
H A Dsmoothing2.5.cpp67 int loci; in ImproveVolumeMesh() local
/dports/devel/gdb/gdb-11.1/gdb/python/lib/gdb/command/
H A Dxmethods.py86 def get_method_matchers_in_loci(loci, locus_re, matcher_re): argument
/dports/biology/ugene/ugene-40.1/src/plugins/external_tool_support/src/spidey/
H A DSpideySupportTask.cpp121 QList<QByteArray> loci = loc.split('-'); in onSubTaskFinished() local
/dports/cad/gmsh/gmsh-4.9.2-source/contrib/Netgen/libsrc/meshing/
H A Dsmoothing2.5.cpp66 int loci; in ImproveVolumeMesh() local
/dports/science/elmerfem/elmerfem-release-9.0/ElmerGUI/netgen/libsrc/meshing/
H A Dsmoothing2.5.cpp66 int loci; in ImproveVolumeMesh() local

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