Searched defs:nnoncanonical (Results 1 – 3 of 3) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | gmap.c | 1276 ncanonical, nsemicanonical, nnoncanonical; in update_stage3list() local
1454 ncanonical, nsemicanonical, nnoncanonical; in stage3_from_usersegment() local
1785 ncanonical, nsemicanonical, nnoncanonical; in stage3_from_gregions() local
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| H A D | stage3.c | 5901 int topens, int tindels, int ncanonical, int nsemicanonical, int nnoncanonical, in Stage3_new()
6052 ncanonical, nsemicanonical, nnoncanonical; in Stage3_new_from_pairs() local
9059 int unknowns, qopens, qindels, topens, tindels, ncanonical, nsemicanonical, nnoncanonical; in traverse_single_gap() local
12233 int *nsemicanonical, int *nnoncanonical, List_T pairs, int cdna_direction) { in score_alignment()
13541 ncanonical, nsemicanonical, nnoncanonical; in path_compute_dir() local
13889 ncanonical, nsemicanonical, nnoncanonical; in path_compute_end5() local
14036 ncanonical, nsemicanonical, nnoncanonical; in path_compute_end3() local
18856 ncanonical, nsemicanonical, nnoncanonical; in Stage3_split() local
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| H A D | pair.c | 7774 int *topens, int *tindels, int *ncanonical, int *nsemicanonical, int *nnoncanonical, in Pair_fracidentity()
7869 int *topens, int *tindels, int *ncanonical, int *nsemicanonical, int *nnoncanonical, in Pair_fracidentity_array()
8119 topens, tindels, ncanonical, nsemicanonical, nnoncanonical; in Pair_frac_error() local
8137 int *ncanonical, int *nsemicanonical, int *nnoncanonical, in Pair_fracidentity_bounded()
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