Searched defs:overlapBases (Results 1 – 9 of 9) sorted by relevance
94 int overlapBases = (e - s); // the number of overlapping bases b/w a and b in FindOverlaps() local125 int overlapBases = (e - s); // the number of overlapping bases b/w a and b in FindOverlaps() local287 … CHRPOS overlapBases = (e - s); // the number of overlapping bases b/w a and b in FindSpanningOverlaps() local
31 public Map<Locatable, Integer> overlapBases = new HashMap<>(); field in LocusWalkerByIntervalUnitTest.TestTransformedLocusWalker
144 CHRPOS overlapBases = (e - s); in IsValidHit() local
88 int overlapBases = (e - s); // the number of overlapping bases b/w a and b in FindWindowOverlaps() local
175 int overlapBases = (e - s); in CollectCoverage() local
201 CHRPOS overlapBases = minEnd - maxStart; in sameChromIntersects() local
402 int overlapBases = 0; in reportOverlapDetail() local
365 int overlapBases = (int)(e - s); in allHits() local423 int overlapBases = (int)(e - s); in anyHits() local
24 …GATKRead makeOverlappingRead(final String leftFlank, final int leftQual, final String overlapBases, in makeOverlappingRead()