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Searched defs:querylength_given (Results 1 – 2 of 2) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dsimplepair.c517 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in compute_cigar_standard()
798 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in compute_cigar_extended()
1123 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in compute_cigar()
1732 int hardclip_low, int hardclip_high, int querylength_given, in Simplepair_overlap_print_sam()
H A Dpair.c1246 int querylength_given, int skiplength, int trim_start, int trim_end, in Pair_print_pathsummary()
2568 int querylength_given, int skiplength, int matches, int mismatches, in print_gff3_mrna()
2881 … int querylength_given, int skiplength, int matches, int mismatches, int qindels, int tindels, in print_gff3_est_match()
2970 int querylength_given, int skiplength, int matches, int mismatches, in print_gff3_exons_forward()
3723 int translation_end, int querylength_given, int skiplength, int matches, int mismatches, in Pair_print_gff3()
5223 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in compute_cigar_standard()
5504 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in compute_cigar_extended()
5829 …ntronp, int *hardclip_start, int *hardclip_end, struct T *pairs, int npairs, int querylength_given, in Pair_compute_cigar()
6331 int hardclip_low, int hardclip_high, int querylength_given, in Pair_print_sam()
9188 Univcoord_T chroffset, Univ_IIT_T chromosome_iit, int querylength_given, in Pair_print_compressed()