| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 276 inline void reverseComplement(TSequence & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
285 inline void reverseComplement(TSequence const & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
292 inline void reverseComplement(StringSet<TSequence, TSpec> & stringSet, Tag<TParallelTag>) in reverseComplement() function
303 inline void reverseComplement(StringSet<TSequence, TSpec> const & stringSet, Tag<TParallelTag>) in reverseComplement() function
312 inline void reverseComplement(TText & text) in reverseComplement() function
318 inline void reverseComplement(TText const & text) in reverseComplement() function
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 276 inline void reverseComplement(TSequence & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
285 inline void reverseComplement(TSequence const & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
292 inline void reverseComplement(StringSet<TSequence, TSpec> & stringSet, Tag<TParallelTag>) in reverseComplement() function
303 inline void reverseComplement(StringSet<TSequence, TSpec> const & stringSet, Tag<TParallelTag>) in reverseComplement() function
312 inline void reverseComplement(TText & text) in reverseComplement() function
318 inline void reverseComplement(TText const & text) in reverseComplement() function
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 276 inline void reverseComplement(TSequence & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
285 inline void reverseComplement(TSequence const & sequence, Tag<TParallelTag> parallelTag) in reverseComplement() function
292 inline void reverseComplement(StringSet<TSequence, TSpec> & stringSet, Tag<TParallelTag>) in reverseComplement() function
303 inline void reverseComplement(StringSet<TSequence, TSpec> const & stringSet, Tag<TParallelTag>) in reverseComplement() function
312 inline void reverseComplement(TText & text) in reverseComplement() function
318 inline void reverseComplement(TText const & text) in reverseComplement() function
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| /dports/biology/abyss/abyss-2.3.1/Common/ |
| H A D | ContigPath.h | 19 void reverseComplement(T first, T last) in reverseComplement() function
28 static inline ContigPath reverseComplement(const ContigPath& path) in reverseComplement() function
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| H A D | Kmer.h | 148 static inline Kmer reverseComplement(const Kmer& seq) in reverseComplement() function
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| /dports/biology/fastp/fastp-0.23.2/src/ |
| H A D | sequence.cpp | 23 string Sequence::reverseComplement(string* origin) { in reverseComplement() function in Sequence
52 Sequence Sequence::reverseComplement(){ in reverseComplement() function in Sequence
|
| /dports/biology/seqan1/seqan-1.3.1/seqan/modifier/ |
| H A D | modifier_shortcuts.h | 157 inline void reverseComplement(TSequence & sequence) in reverseComplement() function
166 inline void reverseComplement(TSequence const & sequence) in reverseComplement() function
181 inline void reverseComplement(StringSet<TSequence, TSpec> & stringSet) in reverseComplement() function
191 inline void reverseComplement(StringSet<TSequence, TSpec> const & stringSet) in reverseComplement() function
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| /dports/biology/abyss/abyss-2.3.1/vendor/btl_bloomfilter/swig/ |
| H A D | testBloom_rolling.pl | 161 sub reverseComplement{ subroutine
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| H A D | writeBloom_rolling.pl | 199 sub reverseComplement{ subroutine
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/spark/sv/utils/ |
| H A D | SVKmer.java | 32 public abstract SVKmer reverseComplement( final int kSize ); in reverseComplement() method in SVKmer
41 protected static long reverseComplement( long val ) { in reverseComplement() method in SVKmer
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| /dports/biology/abyss/abyss-2.3.1/Unittest/Common/ |
| H A D | Sequence.cc | 7 TEST(reverseComplement, base) in TEST() argument
|
| /dports/biology/abyss/abyss-2.3.1/PairedDBG/ |
| H A D | KmerPair.h | 161 void reverseComplement() in reverseComplement() function
213 static inline KmerPair reverseComplement(const KmerPair& u) in reverseComplement() function
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| H A D | Dinuc.h | 49 Dinuc reverseComplement() const in reverseComplement() function
73 static inline Dinuc reverseComplement(const Dinuc& x) in reverseComplement() function
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| /dports/biology/canu/canu-2.2/src/utility/src/utility/ |
| H A D | kmers-tiny.H | 89 kmdata reverseComplement(kmdata mer) const { in reverseComplement() function
112 kmerTiny &reverseComplement(void) { in reverseComplement() function
|
| /dports/biology/bamutil/bamUtil-1.0.15/libStatGen/general/ |
| H A D | BaseUtilities.cpp | 86 void BaseUtilities::reverseComplement(std::string& sequence) in reverseComplement() function in BaseUtilities
|
| /dports/biology/abyss/abyss-2.3.1/BloomDBG/ |
| H A D | MaskedKmer.h | 102 static inline MaskedKmer reverseComplement(const MaskedKmer& seq) in reverseComplement() function
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| H A D | LightweightKmer.h | 114 void reverseComplement() in reverseComplement() function
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Core/src/datatype/ |
| H A D | DNASequenceUtils.cpp | 139 QByteArray DNASequenceUtils::reverseComplement(const QByteArray &sequence, const DNAAlphabet *alpha… in reverseComplement() function in U2::DNASequenceUtils
143 DNASequence DNASequenceUtils::reverseComplement(const DNASequence &dnaSequence) { in reverseComplement() function in U2::DNASequenceUtils
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| /dports/biology/bbmap/bbmap/current/prok/ |
| H A D | ScafData.java | 47 void reverseComplement(){ in reverseComplement() method in ScafData
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| /dports/biology/mmseqs2/MMseqs2-13-45111/src/util/ |
| H A D | extractframes.cpp | 83 char reverseComplement = Orf::complement(data[sequenceLength - pos - 1]); in extractframes() local
|
| /dports/biology/ugene/ugene-40.1/src/corelibs/U2Formats/src/tasks/ |
| H A D | ExportTasks.h | 110 const bool reverseComplement; variable
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| /dports/biology/abyss/abyss-2.3.1/Assembly/ |
| H A D | SeqExt.h | 16 static inline uint8_t reverseComplement(uint8_t base) in reverseComplement() function
|
| /dports/biology/artemis/artemis-17.0.1-11-g3e43d27e/test/uk/ac/sanger/artemis/sequence/ |
| H A D | BasesTest.java | 514 …String reverseComplement = Bases.reverseComplement("gaggcggggaaagcactgcgcgctgacggtggtgctgattgtattt… in testStaticReverseComplement() local
523 …char[] reverseComplement = Bases.reverseComplement("gaggcggggaaagcactgcgcgctgacggtggtgctgattgtattt… in testStaticCharArrReverseComplement() local
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| /dports/biology/gatk/gatk-4.2.0.0/src/main/java/org/broadinstitute/hellbender/tools/walkers/readorientation/ |
| H A D | LearnReadOrientationModel.java | 128 final String reverseComplement = SequenceUtil.reverseComplement(refContext); in doWork() local
237 final String reverseComplement = SequenceUtil.reverseComplement(refContext); in combineAltDepthOneHistogramWithRC() local
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| /dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
| H A D | gdna.cpp | 51 char* reverseComplement(char* seq, int slen) { in reverseComplement() function
|