| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/tests/seeds/ |
| H A D | test_seeds_global_chaining.cpp | 54 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
65 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
78 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
90 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
107 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
121 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
134 TSeedSet seedSet; in SEQAN_DEFINE_TEST() local
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| H A D | test_align_banded_chain_impl.cpp | 56 TSeedSet seedSet; in testBandedChainAlignmentEmptyChain() local
94 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
119 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
154 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
189 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
224 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
259 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
294 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
329 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
364 TSeedSet seedSet; in testBandedChainAlignmentOneSeed() local
[all …]
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| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/include/seqan/seeds/ |
| H A D | seeds_seed_set_base.h | 176 minScore(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minScore()
201 void setMinScore(SeedSet<TSeed, TSeedSetSpec> & seedSet, TScoreValue val) in setMinScore()
212 minSeedSize(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minSeedSize()
222 void setMinSeedSize(SeedSet<TSeed, TSeedSetSpec> & seedSet, TSize siz) in setMinSeedSize()
233 inline bool _qualityReached(SeedSet<TSeed, TSeedSetSpec> const & seedSet, in _qualityReached()
255 inline void clear(SeedSet<TSeed, TSeedSetSpec> & seedSet) in clear()
270 SeedSet<TSeed, TSeedSetSpec> const & seedSet, in __write()
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| /dports/biology/seqan/seqan-library-2.4.0/include/seqan/seeds/ |
| H A D | seeds_seed_set_base.h | 176 minScore(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minScore()
201 void setMinScore(SeedSet<TSeed, TSeedSetSpec> & seedSet, TScoreValue val) in setMinScore()
212 minSeedSize(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minSeedSize()
222 void setMinSeedSize(SeedSet<TSeed, TSeedSetSpec> & seedSet, TSize siz) in setMinSeedSize()
233 inline bool _qualityReached(SeedSet<TSeed, TSeedSetSpec> const & seedSet, in _qualityReached()
255 inline void clear(SeedSet<TSeed, TSeedSetSpec> & seedSet) in clear()
270 SeedSet<TSeed, TSeedSetSpec> const & seedSet, in __write()
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| /dports/biology/pbseqan/seqan-21d95d737d8decb5cc3693b9065d81e831e7f57d/include/seqan/seeds/ |
| H A D | seeds_seed_set_base.h | 176 minScore(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minScore()
201 void setMinScore(SeedSet<TSeed, TSeedSetSpec> & seedSet, TScoreValue val) in setMinScore()
212 minSeedSize(SeedSet<TSeed, TSeedSetSpec> const & seedSet) in minSeedSize()
222 void setMinSeedSize(SeedSet<TSeed, TSeedSetSpec> & seedSet, TSize siz) in setMinSeedSize()
233 inline bool _qualityReached(SeedSet<TSeed, TSeedSetSpec> const & seedSet, in _qualityReached()
255 inline void clear(SeedSet<TSeed, TSeedSetSpec> & seedSet) in clear()
270 SeedSet<TSeed, TSeedSetSpec> const & seedSet, in __write()
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| /dports/biology/seqan1/seqan-1.3.1/seqan/seeds2/ |
| H A D | seeds_seed_set_base.h | 81 void setMinSeedSizeThreshold(TSeedSet & seedSet, TSize const & size) in setMinSeedSizeThreshold()
95 bool _qualityReached(TSeed const & seed, TSeedSet const & seedSet, MinSeedSize const &) in _qualityReached()
116 void setMinScoreThreshold(TSeedSet & seedSet, TScore const & score) in setMinScoreThreshold()
131 bool _qualityReached(TSeed const & seed, TSeedSet const & seedSet, MinScore const &) in _qualityReached()
253 SeedSet<TSeedSpec, TSeedSetSpec, TSeedConfig> const & seedSet, in _write()
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| /dports/databases/mariadb105-client/mariadb-10.5.15/storage/columnstore/columnstore/utils/funcexp/ |
| H A D | functor_export.h | 45 void seedSet(bool seedSet) in seedSet() function
|
| /dports/databases/mariadb105-server/mariadb-10.5.15/storage/columnstore/columnstore/utils/funcexp/ |
| H A D | functor_export.h | 45 void seedSet(bool seedSet) in seedSet() function
|
| /dports/science/dakota/dakota-6.13.0-release-public.src-UI/packages/external/DDACE/include/ |
| H A D | Distribution.h | 91 static bool seedSet() {return seedSet_;} in seedSet() function
163 static bool seedSet() {return DistributionBase::seedSet();} in seedSet() function
|
| /dports/biology/seqan/seqan-library-2.4.0/share/doc/seqan/html/demos/dox/seeds/ |
| H A D | seeds_chaining.cpp | 9 SeedSet<Seed<Simple>, Unordered> seedSet; in main() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/dox/seeds/ |
| H A D | seeds_chaining.cpp | 9 SeedSet<Seed<Simple>, Unordered> seedSet; in main() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/tutorial/seed_and_extend/ |
| H A D | example6.cpp | 15 TSeedSet seedSet; in main() local
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| H A D | solution5.cpp | 12 TSeedSet seedSet; in main() local
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| H A D | example4.cpp | 15 TSeedSet seedSet; in main() local
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| H A D | example5.cpp | 26 TSeedSet seedSet; in main() local
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| H A D | solution4.cpp | 23 TSeedSet seedSet; in main() local
|
| /dports/biology/seqan-apps/seqan-seqan-v2.4.0/demos/unassigned_or_unused/ |
| H A D | seeds.cpp | 30 SeedSet<Seed<Simple>, Unordered> seedSet; in main() local
|
| /dports/java/openjdk11/jdk11u-jdk-11.0.13-8-1/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk13/jdk13u-jdk-13.0.10-1-1/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk11-jre/jdk11u-jdk-11.0.13-8-1/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk12/openjdk-jdk12u-jdk-12.0.2-10-4/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk15/jdk15u-jdk-15.0.6-1-1/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk16/jdk16u-jdk-16.0.2-7-1/test/jdk/java/util/Comparator/ |
| H A D | BasicTest.java | 58 return intField;
59 }
|
| /dports/java/openjdk14/jdk14u-jdk-14.0.2-12-1/test/jdk/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|
| /dports/java/openjdk8/jdk8u-jdk8u312-b07.1/jdk/test/java/util/Collections/ |
| H A D | Wrappers.java | 58 TreeSet<Integer> seedSet = new TreeSet<>(); in collectionCases() local
|