| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blast_sra_input/ |
| H A D | blast_sra_input.cpp | 117 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadOneSeq() local
134 CRef<CSeq_entry> seq_entry = x_ReadOneSeq(); in x_ReadOneSeq() local
203 CRef<CSeq_entry> seq_entry; in x_GetNextSeq_loc() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/unit_tests/api/ |
| H A D | search_strategy_unit_test.cpp | 105 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
136 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
167 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
250 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
418 CSeq_entry seq_entry; in BOOST_AUTO_TEST_CASE() local
469 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
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| H A D | querydata_unit_test.cpp | 505 CRef<CSeq_entry> seq_entry(new CSeq_entry); in s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set() local
576 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_FIXTURE_TEST_SUITE() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/unit_tests/api/ |
| H A D | search_strategy_unit_test.cpp | 105 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
136 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
167 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
250 list<CRef<CSeq_entry> > seq_entry = bss.GetSeq_set(); in BOOST_AUTO_TEST_CASE() local
418 CSeq_entry seq_entry; in BOOST_AUTO_TEST_CASE() local
469 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
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| H A D | querydata_unit_test.cpp | 505 CRef<CSeq_entry> seq_entry(new CSeq_entry); in s_ObjMgrFree_QueryFactory_LocalDataFromBioseq_set() local
576 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_FIXTURE_TEST_SUITE() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/blastinput/ |
| H A D | blast_fasta_input.cpp | 358 CRef<CSeq_entry> seq_entry(m_InputReader->ReadOneSeq()); in x_FastaToSeqLoc() local
736 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastc() local
762 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastc() local
832 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastaOneSeq() local
898 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastqOneSeq() local
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| H A D | blast_asn1_input.cpp | 92 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadOneSeq() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/blastinput/ |
| H A D | blast_fasta_input.cpp | 358 CRef<CSeq_entry> seq_entry(m_InputReader->ReadOneSeq()); in x_FastaToSeqLoc() local
736 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastc() local
762 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastc() local
832 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastaOneSeq() local
898 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadFastqOneSeq() local
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| H A D | blast_asn1_input.cpp | 92 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_ReadOneSeq() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/unit_test/ |
| H A D | unit_test_gene_model.cpp | 272 CRef<CSeq_entry> seq_entry = fastareader.ReadOneSeq(); in AddFastaToScope() local
394 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1579 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1648 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1694 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1751 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1795 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
1851 CRef<CSeq_entry> seq_entry(new CSeq_entry); in BOOST_AUTO_TEST_CASE() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
| H A D | make_cdr_prods.cpp | 113 CRef<CSeq_entry> seq_entry(new CSeq_entry); in MakeCdrProds() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/flatfile/ |
| H A D | fcleanup.cpp | 164 static void MoveAnnotToTop(objects::CSeq_entry& seq_entry) in MoveAnnotToTop()
190 static void MoveBiomolToTop(objects::CSeq_entry& seq_entry) in MoveBiomolToTop()
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| /dports/biology/ncbi-toolkit/ncbi/biostruc/pdbeast/ |
| H A D | interface.h | 48 Char seq_entry[MaxEntryNum][12], seq_entry_TaxState[MaxEntryNum]; variable
|
| /dports/net/gspoof/gspoof-3.2/ |
| H A D | interface.h | 47 GtkWidget *seq_entry; variable
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/ssub_fork/ |
| H A D | ssub_fork.cpp | 478 CRef<CSeq_entry> seq_entry = Ref(new CSeq_entry()); in xWrapSeqEntries() local
591 CSeqEntryHelper(CSeq_entry& seq_entry) : in CSeqEntryHelper()
752 CSeq_entry& seq_entry = **it; in xFlattenSeqEntrys() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
| H A D | objmgrfree_query_data.cpp | 242 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_BioseqSetFromBioseq() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
| H A D | objmgrfree_query_data.cpp | 242 CRef<CSeq_entry> seq_entry(new CSeq_entry); in x_BioseqSetFromBioseq() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/app/segmasker/ |
| H A D | segmasker.cpp | 224 CRef<CSeq_entry> seq_entry; in Run() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/app/segmasker/ |
| H A D | segmasker.cpp | 224 CRef<CSeq_entry> seq_entry; in Run() local
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| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqset/ |
| H A D | Seq_entry.cpp | 455 const CSeq_entry* seq_entry = seq.GetParentEntry(); in sx_FindBestId() local
494 const CSeq_entry* seq_entry = seq.GetParentEntry(); in sx_FindBestId() local
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| /dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqset/ |
| H A D | Seq_entry.cpp | 455 const CSeq_entry* seq_entry = seq.GetParentEntry(); in sx_FindBestId() local
494 const CSeq_entry* seq_entry = seq.GetParentEntry(); in sx_FindBestId() local
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| /dports/lang/gcc12-devel/gcc-12-20211205/gcc/ |
| H A D | tree-ssa-loop-im.c | 2210 struct seq_entry struct
2212 seq_entry () {} in seq_entry() argument
2221 execute_sm_exit (class loop *loop, edge ex, vec<seq_entry> &seq, in execute_sm_exit() argument
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| /dports/lang/gcc11-devel/gcc-11-20211009/gcc/ |
| H A D | tree-ssa-loop-im.c | 2170 struct seq_entry struct
2172 seq_entry () {} in seq_entry() argument
2181 execute_sm_exit (class loop *loop, edge ex, vec<seq_entry> &seq, in execute_sm_exit() argument
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| /dports/misc/cxx_atomics_pic/gcc-11.2.0/gcc/ |
| H A D | tree-ssa-loop-im.c | 2170 struct seq_entry struct
2172 seq_entry () {} in seq_entry() argument
2181 execute_sm_exit (class loop *loop, edge ex, vec<seq_entry> &seq, in execute_sm_exit() argument
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| /dports/lang/gcc11/gcc-11.2.0/gcc/ |
| H A D | tree-ssa-loop-im.c | 2170 struct seq_entry struct
2172 seq_entry () {} in seq_entry() argument
2181 execute_sm_exit (class loop *loop, edge ex, vec<seq_entry> &seq, in execute_sm_exit() argument
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