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Searched defs:topens (Results 1 – 4 of 4) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddynprog.c120 Dynprog_score (int matches, int mismatches, int qopens, int qindels, int topens, int tindels, in Dynprog_score()
H A Dpair.c1248 int qopens, int qindels, int topens, int tindels, in Pair_print_pathsummary()
7774 int *topens, int *tindels, int *ncanonical, int *nsemicanonical, int *nnoncanonical, in Pair_fracidentity()
7869 int *topens, int *tindels, int *ncanonical, int *nsemicanonical, int *nnoncanonical, in Pair_fracidentity_array()
8119 topens, tindels, ncanonical, nsemicanonical, nnoncanonical; in Pair_frac_error() local
8136 int *qopens, int *qindels, int *topens, int *tindels, in Pair_fracidentity_bounded()
H A Dstage3.c586 int topens; member
5901 int topens, int tindels, int ncanonical, int nsemicanonical, int nnoncanonical, in Stage3_new()
6051 int goodness, matches, unknowns, mismatches, qopens, qindels, topens, tindels, in Stage3_new_from_pairs() local
9059 int unknowns, qopens, qindels, topens, tindels, ncanonical, nsemicanonical, nnoncanonical; in traverse_single_gap() local
12235 int nunknowns, qopens, qindels, topens, tindels; in score_alignment() local
13540 int matches, unknowns, mismatches, qopens, qindels, topens, tindels, in path_compute_dir() local
13888 int nmatches, nunknowns, nmismatches, qopens, qindels, topens, tindels, in path_compute_end5() local
14035 int nmatches, nunknowns, nmismatches, qopens, qindels, topens, tindels, in path_compute_end3() local
18855 int goodness, matches, unknowns, mismatches, qopens, qindels, topens, tindels, in Stage3_split() local
H A Dgmap.c1275 int npairs, cdna_direction, matches, unknowns, mismatches, qopens, qindels, topens, tindels, in update_stage3list() local
1453 int npairs, cdna_direction, matches, unknowns, mismatches, qopens, qindels, topens, tindels, in stage3_from_usersegment() local
1784 int npairs, cdna_direction, matches, unknowns, mismatches, qopens, qindels, topens, tindels, in stage3_from_gregions() local