| /dports/science/massxpert/massxpert-c229f4a1abde3c20b83a90e50f9c5d79104dfa5f/lib/ |
| H A D | cleaveSpec.cpp | 391 CleaveMotif *motif = new CleaveMotif(mp_polChemDef, "NOT_SET"); in parse() local
393 motif->setForCleave(isForCleave); in parse()
395 if(motif->parse(currSite) == -1) in parse()
400 delete motif; in parse()
409 m_motifList.append(motif); in parse()
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| /dports/biology/py-bx-python/bx-python-0.8.13/ |
| H A D | pyproject.toml | 6 …bx.intervals, bx.intervals.operations, bx.intseq, bx.misc, bx.motif, bx.motif.io, bx.motif.logo, b…
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| /dports/biology/vt/vt-0.57721/ |
| H A D | large_motif_tree.cpp | 125 uint32_t LargeMotifTree::canonical(uint32_t motif) in canonical() argument
127 uint32_t cmotif = motif; in canonical()
128 uint32_t smotif = motif; in canonical()
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| H A D | motif_map.cpp | 111 bool MotifMap::is_aperiodic(uint32_t motif, uint32_t len) in is_aperiodic() argument
128 n = set_seqi(n, i*j+k, get_seqi(motif, k)); in is_aperiodic()
133 if (n==motif) return false; in is_aperiodic()
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| H A D | vntr_tree.h | 37 std::string motif;
50 VNTRNode(std::string motif, std::string basis, int32_t exact_count, int32_t fuzzy_count);
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| H A D | candidate_motif_picker.h | 108 bool is_in_indel_fragment(std::string motif);
113 std::string choose_repeat_unit(std::string& ref, std::string& motif);
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| /dports/x11/mlterm/mlterm-3.9.1/contrib/scrollbar/extra/ |
| H A D | ChangeLog | 3 * next.c, mozmodern.c, athena.c, motif.c:
23 * athena.c, motif.c: removed unused variables
43 * Makefile.in, athena.c, motif.c, motif_data.h, mozmodern.c,
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| /dports/biology/py-bx-python/bx-python-0.8.13/lib/bx/pwm/ |
| H A D | maf_select_motifs.py | 29 motif = sys.argv[5]
31 motif = None
34 for mafmotif, pwm_score, motif_score in MafMotifSelect(maf, pwm, motif, threshold):
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| /dports/biology/viennarna/ViennaRNA-2.4.18/tests/data/ |
| H A D | rnafold.cmds | 10 # Ligand motif 'AAA' in all loop types
13 # Ligand motif 'CCC' in exterior loops
|
| /dports/x11-toolkits/lesstif/lesstif-0.95.2/test/ |
| H A D | Makefile.am | 26 motif-tests:
28 (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) motif-tests); \
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| /dports/www/dolibarr13/dolibarr-13.0.5/htdocs/compta/prelevement/class/ |
| H A D | rejetprelevement.class.php | 82 * @param string $motif Motif
88 public function create($user, $id, $motif, $date_rejet, $bonid, $facturation = 0) argument
114 $sql .= ", ".$motif;
349 $this->motif = $this->motifs[$obj->motif];
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| /dports/www/dolibarr/dolibarr-14.0.3/htdocs/compta/prelevement/class/ |
| H A D | rejetprelevement.class.php | 83 * @param string $motif Motif
89 public function create($user, $id, $motif, $date_rejet, $bonid, $facturation = 0) argument
119 $sql .= ", ".$motif;
349 $this->motif = $this->motifs[$obj->motif];
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| /dports/biology/viennarna/ViennaRNA-2.4.18/doc/latex/ |
| H A D | group__domains__up.tex | 95 …motif}} (\mbox{\hyperlink{group__fold__compound_ga1b0cef17fd40466cef5968eaeeff6166}{vrna\+\_\+fold…
115 int \mbox{\hyperlink{group__domains__up_ae17005ef8043aca2fc3864804cd5def6}{uniq\+\_\+motif\+\_\+cou…
121 int \mbox{\hyperlink{group__domains__up_a5ad34148ea1d2e501f3e02029449546e}{motif\+\_\+count}}
124 char $\ast$$\ast$ \mbox{\hyperlink{group__domains__up_af285436bbdea4436ad2cedec65d48c75}{motif}}
127 char $\ast$$\ast$ \mbox{\hyperlink{group__domains__up_ad061d55ef0b51d304c8dce88ebdbbf78}{motif\+\_\…
133 double $\ast$ \mbox{\hyperlink{group__domains__up_aae4f0a45419784fb7c244bce2781403d}{motif\+\_\+en}}
405 …motif (\begin{DoxyParamCaption}\item[{\mbox{\hyperlink{group__fold__compound_ga1b0cef17fd40466cef5…
413 Add an unstructured domain motif, e.\+g. for ligand binding.
424 {\em motif} & The sequence motif the ligand binds to \\
426 {\em motif\+\_\+en} & The binding free energy of the ligand in kcal/mol \\
[all …]
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| H A D | unstructured__domains_8h_source.tex | 46 … \textcolor{keywordtype}{int} motif,}
73 … \mbox{\hyperlink{group__domains__up_a5ad34148ea1d2e501f3e02029449546e}{motif\_count}}; …
74 … **\mbox{\hyperlink{group__domains__up_af285436bbdea4436ad2cedec65d48c75}{motif}}; …
75 … **\mbox{\hyperlink{group__domains__up_ad061d55ef0b51d304c8dce88ebdbbf78}{motif\_name}}; …
76 … *\mbox{\hyperlink{group__domains__up_a6a9f89ab7d147eb0ffd6cf8d77d178c0}{motif\_size}}; …
77 … *\mbox{\hyperlink{group__domains__up_aae4f0a45419784fb7c244bce2781403d}{motif\_en}}; …
78 … *\mbox{\hyperlink{group__domains__up_a3f0c026cced369ff176a66b2820f2057}{motif\_type}}; …
119 … \textcolor{keyword}{const} \textcolor{keywordtype}{char} *motif,}
120 \DoxyCodeLine{00370 \textcolor{keywordtype}{double} motif\_e…
121 … \textcolor{keyword}{const} \textcolor{keywordtype}{char} *motif\_name,}
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| /dports/audio/praat/praat-6.2.03/sys/ |
| H A D | GuiText.cpp | 24 #if motif
33 #if motif
115 #elif motif in _GuiText_setTheTextFocus()
204 #elif motif in _GuiText_delete()
222 #elif motif in _GuiText_insert()
469 #elif motif
582 #elif motif in GuiText_create()
760 #elif motif in GuiText_copy()
782 #elif motif in GuiText_cut()
820 #elif motif in GuiText_getSelection()
[all …]
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| H A D | GuiLabel.cpp | 25 #elif motif
37 #elif motif
101 #elif motif in GuiLabel_create()
150 #elif motif in GuiLabel_setText()
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| H A D | Gui_messages.cpp | 52 #elif motif
124 #elif motif
324 #elif motif
344 #elif motif
357 #elif motif
372 #elif motif
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| H A D | GuiMenu.cpp | 60 #elif motif
284 #elif motif in v_hide()
294 #elif motif in v_setSensitive()
305 #elif motif in v_show()
335 #elif motif in GuiMenu_empty()
395 #elif motif in GuiMenu_createInWindow()
486 #elif motif in GuiMenu_createInWindow()
514 #elif motif in GuiMenu_createInMenu()
547 #elif motif in GuiMenu_createInMenu()
578 #elif motif in GuiMenu_createInForm()
[all …]
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| H A D | GuiThing.cpp | 37 #elif motif
58 #elif motif
91 #elif motif
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| /dports/biology/emboss/EMBOSS-6.6.0/doc/programs/master/emboss/apps/inc/ |
| H A D | edamisid.output | 22 name: Sequence motif identifier
24 def: Identifier of a sequence motif, for example an entry from a motif database.
31 relationship: is_identifier_of EDAM_data:1353 ! Sequence motif
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| /dports/biology/emboss/EMBOSS-6.6.0/emboss/acd/ |
| H A D | prosextract.acd | 2 documentation: "Process the PROSITE motif database for use by patmatmotifs"
21 relations: "EDAM_data:1353 Sequence motif"
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| /dports/games/chessx/chessx-1.5.6/src/gui/ |
| H A D | style.cpp | 40 QString motif = AppSettings->getValue("/MainWindow/Theme").toString(); in styleBase() local
41 if (motif == "Orange") in styleBase()
48 base = QStyleFactory::create(motif); in styleBase()
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| /dports/math/R-cran-igraph/igraph/man/ |
| H A D | motifs.Rd | 13 \item{size}{The size of the motif, currently 3 and 4 are supported only.}
17 of the motif (the \code{size} argument). By default no cuts are made.}
21 each motif in the graph. The motifs are ordered by their isomorphism
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| /dports/x11-toolkits/open-motif/motif-2.3.8/demos/unsupported/motifshell/ |
| H A D | README | 3 README for Motif Shell - A shell environment using motif
10 is a demo of an environment created using motif. The purpose
11 of the demo is to show how motif may be used as an stand-alone
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| /dports/editors/vim/vim-8.2.3745/src/ |
| H A D | INSTALL | 112 CFLAGS=-DCOMPILER_FLAG ./configure --enable-gui=motif
133 --enable-gui=gtk or: gtk2, motif, athena or auto
135 --disable-motif-check
147 --enable-{gtk,gtk2,kde,motif,athena}-check all default to "yes", such that if
150 --disable-{gtk,gtk2,kde,motif,athena}-check.
153 Motif, you then also specify --disable-motif-check. This results in only
157 --enable-gui={gtk,gtk2,kde,motif,athena}. So if you wanted to only use Motif,
158 then you'd specify --enable-gui=motif. Once you specify what you want, the
159 --enable-{gtk,gtk2,kde,motif,athena}-check options are ignored.
207 And run configure with "--disable-motif-check".
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