H A D | IceCreamAlignerJNI.c | 46 for(int rpos=0, apos=1; rpos<rlen; rpos++, apos++){ in alignForwardJNI() local 57 for(int apos=1; apos<arrayLength2; apos++){ in alignForwardJNI() local 80 for(int apos=1; apos<arrayLength2; apos++){//Grab high score from last iteration in alignForwardJNI() local 85 maxRpos=apos-1; in alignForwardJNI() 145 for(jshort rpos=0, apos=1; rpos<rlen; rpos++, apos++){ in alignForward16JNI() local 156 for(jshort apos=1; apos<arrayLength2; apos++){ in alignForward16JNI() local 179 for(jshort apos=1; apos<arrayLength2; apos++){//Grab high score from last iteration in alignForward16JNI() local 238 for(jint qpos=0, apos=1; qpos<arrayLength; qpos++, apos++){ in alignForwardShortJNI() local 250 for(jint qpos=0, apos=1; qpos<arrayLength; qpos++, apos++){ in alignForwardShortJNI() local 327 for(jshort qpos=0, apos=1; qpos<arrayLength; qpos++, apos++){ in alignForwardShort16JNI() local [all …]
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