1% VCF2DAG(1) vcf2dag (vcflib) | vcf2dag (VCF transformation)
2% Erik Garrison and vcflib contributors
3
4# NAME
5
6**vcf2dag**
7
8# SYNOPSIS
9
10**vcf2dag** [options] [<vcf file>]
11
12# DESCRIPTION
13
14Modify VCF to be able to build a directed acyclic graph (DAG)
15
16
17
18# OPTIONS
19
20```
21
22options:
23    -r, --reference FILE         FASTA reference file.
24
25Modify the VCF file so that homozygous regions are included as REF/. calls.
26For each ref and alt allele, assign an index.  These steps are sufficient to
27enable use of the VCF as a DAG (specifically a partially-ordered graph).
28
29Type: transformation
30
31```
32
33
34
35
36
37# EXIT VALUES
38
39**0**
40: Success
41
42**not 0**
43: Failure
44
45# SEE ALSO
46
47
48
49[vcflib](./vcflib.md)(1)
50
51
52
53# OTHER
54
55## Source code
56
57[vcf2dag.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcf2dag.cpp)
58
59# LICENSE
60
61Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.
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