1% VCFRANDOM(1) vcfrandom (vcflib) | vcfrandom (VCF statistics)
2% Erik Garrison and vcflib contributors
3
4# NAME
5
6**vcfrandom**
7
8# SYNOPSIS
9
10**vcfrandom**
11
12# DESCRIPTION
13
14Generate a random VCF file
15
16
17
18
19
20# EXAMPLES
21
22```
23
24Example:
25
26    **vcfrandom**
27
28##fileformat=VCFv4.0
29##source=**vcfrandom**
30##reference=/d2/data/references/build_37/human_reference_v37.fa
31##phasing=none
32##INFO=<ID=NS,Number=1,Type=Integer,Description="Number of samples with data">
33##INFO=<ID=DP,Number=1,Type=Integer,Description="Total read depth at the locus">
34##INFO=<ID=AC,Number=1,Type=Integer,Description="Total number of alternate alleles in called genotypes">
35##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
36##INFO=<ID=AF,Number=1,Type=Float,Description="Estimated allele frequency in the range (0,1]">
37##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
38##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality, the Phred-scaled marginal (or unconditional) probability of the called genotype">
39##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
40#CHROM  POS     ID      REF     ALT     QUAL    FILTER  INFO    FORMAT  bill
41one     1       .       G       G,A     100     .       DP=83   GT:DP   0/1:1
42one     2       .       G       G,A     100     .       DP=3    GT:DP   0/1:49
43one     3       .       G       C,T     100     .       DP=5    GT:DP   0/1:12
44one     4       .       C       G,T     100     .       DP=51   GT:DP   0/1:60
45one     5       .       A       T,A     100     .       DP=31   GT:DP   0/1:89
46one     6       .       T       T,A     100     .       DP=56   GT:DP   0/1:60
47one     7       .       T       A,C     100     .       DP=78   GT:DP   0/1:75
48one     8       .       T       G,A     100     .       DP=73   GT:DP   0/1:78
49one     9       .       C       C,G     100     .       DP=42   GT:DP   0/1:67
50
51
52Type: statistics
53
54
55
56```
57
58
59
60# EXIT VALUES
61
62**0**
63: Success
64
65**not 0**
66: Failure
67
68# SEE ALSO
69
70
71
72[vcflib](./vcflib.md)(1)
73
74
75
76# OTHER
77
78## Source code
79
80[vcfrandom.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfrandom.cpp)
81
82# LICENSE
83
84Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.
85
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