1% VCFREMOVEABERRANTGENOTYPES(1) vcfremoveaberrantgenotypes (vcflib) | vcfremoveaberrantgenotypes (VCF transformation)
2% Erik Garrison and vcflib contributors
3
4# NAME
5
6**vcfremoveaberrantgenotypes**
7
8# SYNOPSIS
9
10**vcfremoveaberrantgenotypes** <vcf file>
11
12# DESCRIPTION
13
14strips samples which are homozygous but have observations implying heterozygosity. Remove samples for which the reported genotype (GT) and observation counts disagree (AO, RO).
15
16
17
18# OPTIONS
19
20```
21
22
23Type: transformation
24
25```
26
27
28
29
30
31# EXIT VALUES
32
33**0**
34: Success
35
36**not 0**
37: Failure
38
39# SEE ALSO
40
41
42
43[vcflib](./vcflib.md)(1)
44
45
46
47# OTHER
48
49## Source code
50
51[vcfremoveaberrantgenotypes.cpp](https://github.com/vcflib/vcflib/blob/master/src/vcfremoveaberrantgenotypes.cpp)
52
53# LICENSE
54
55Copyright 2011-2020 (C) Erik Garrison and vcflib contributors. MIT licensed.
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