1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_BAM_FORMAT_H_
23 #define _U2_BAM_FORMAT_H_
24 
25 #include <QStringList>
26 
27 #include <U2Core/DbiDocumentFormat.h>
28 #include <U2Core/GUrl.h>
29 #include <U2Core/U2FormatCheckResult.h>
30 
31 namespace U2 {
32 
33 class BAMFormat : public DbiDocumentFormat {
34     Q_OBJECT
35 public:
36     BAMFormat();
37 
38     void storeDocument(Document *d, IOAdapter *io, U2OpStatus &os);
39 };
40 
41 namespace BAM {
42 
43 class BAMFormatUtils : public QObject {
44     Q_OBJECT
45 public:
46     BAMFormatUtils(QObject *parent = nullptr);
47 
48     FormatCheckResult checkRawData(const QByteArray &rawData, const GUrl &url = GUrl()) const;
49 
getSupportedDocumentFileExtensions()50     QStringList getSupportedDocumentFileExtensions() const {
51         return fileExtensions;
52     }
53 
54 private:
55     QStringList fileExtensions;
56 };
57 
58 }  // namespace BAM
59 }  // namespace U2
60 
61 #endif  // _U2_BAM_FORMAT_H_
62