1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_KRAKEN_CLASSIFY_WORKER_H_ 23 #define _U2_KRAKEN_CLASSIFY_WORKER_H_ 24 25 #include <U2Lang/LocalDomain.h> 26 27 #include "../ngs_reads_classification/src/TaxonomySupport.h" 28 #include "KrakenClassifyTask.h" 29 30 namespace U2 { 31 namespace LocalWorkflow { 32 33 class KrakenClassifyWorker : public BaseWorker { 34 Q_OBJECT 35 public: 36 KrakenClassifyWorker(Actor *actor); 37 38 void init(); 39 Task *tick(); 40 void cleanup(); 41 42 private slots: 43 void sl_taskFinished(Task *task); 44 45 private: 46 bool isReadyToRun() const; 47 bool dataFinished() const; 48 49 KrakenClassifyTaskSettings getSettings(U2OpStatus &os); 50 IntegralBus *input; 51 IntegralBus *output; 52 53 bool pairedReadsInput; 54 55 static const QString KRAKEN_DIR; 56 }; 57 58 } // namespace LocalWorkflow 59 } // namespace U2 60 61 #endif // _U2_KRAKEN_CLASSIFY_WORKER_H_ 62