1 /**
2  * UGENE - Integrated Bioinformatics Tools.
3  * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru>
4  * http://ugene.net
5  *
6  * This program is free software; you can redistribute it and/or
7  * modify it under the terms of the GNU General Public License
8  * as published by the Free Software Foundation; either version 2
9  * of the License, or (at your option) any later version.
10  *
11  * This program is distributed in the hope that it will be useful,
12  * but WITHOUT ANY WARRANTY; without even the implied warranty of
13  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
14  * GNU General Public License for more details.
15  *
16  * You should have received a copy of the GNU General Public License
17  * along with this program; if not, write to the Free Software
18  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston,
19  * MA 02110-1301, USA.
20  */
21 
22 #ifndef _U2_MYSQL_ASSEMBLY_ADAPTER_H_
23 #define _U2_MYSQL_ASSEMBLY_ADAPTER_H_
24 
25 #include <U2Core/U2Assembly.h>
26 
27 #include "MysqlHelpers.h"
28 #include "util/AssemblyAdapter.h"
29 #include "util/AssemblyPackAlgorithm.h"
30 
31 namespace U2 {
32 
33 class U2OpStatus;
34 class U2AssemblyReadsImportInfo;
35 
36 class MysqlAssemblyAdapter : public AssemblyAdapter {
37 public:
38     MysqlAssemblyAdapter(const U2DataId &assemblyId, const AssemblyCompressor *compressor, MysqlDbRef *ref);
39 
40 protected:
41     MysqlDbRef *db;
42 };
43 
44 class MysqlAssemblyNameFilter : public MysqlRSFilter<U2AssemblyRead> {
45 public:
46     MysqlAssemblyNameFilter(const QByteArray &expectedName);
47     virtual bool filter(const U2AssemblyRead &r);
48 
49 protected:
50     QByteArray name;
51 };
52 
53 class MysqlSimpleAssemblyReadLoader : public MysqlRSLoader<U2AssemblyRead> {
54 public:
55     U2AssemblyRead load(U2SqlQuery *q);
56 };
57 
58 class MysqlSimpleAssemblyReadPackedDataLoader : public MysqlRSLoader<PackAlgorithmData> {
59 public:
60     virtual PackAlgorithmData load(U2SqlQuery *q);
61 };
62 
63 }  // namespace U2
64 
65 #endif  // _U2_MYSQL_ASSEMBLY_ADAPTER_H_
66