1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_MYSQL_ASSEMBLY_ADAPTER_H_ 23 #define _U2_MYSQL_ASSEMBLY_ADAPTER_H_ 24 25 #include <U2Core/U2Assembly.h> 26 27 #include "MysqlHelpers.h" 28 #include "util/AssemblyAdapter.h" 29 #include "util/AssemblyPackAlgorithm.h" 30 31 namespace U2 { 32 33 class U2OpStatus; 34 class U2AssemblyReadsImportInfo; 35 36 class MysqlAssemblyAdapter : public AssemblyAdapter { 37 public: 38 MysqlAssemblyAdapter(const U2DataId &assemblyId, const AssemblyCompressor *compressor, MysqlDbRef *ref); 39 40 protected: 41 MysqlDbRef *db; 42 }; 43 44 class MysqlAssemblyNameFilter : public MysqlRSFilter<U2AssemblyRead> { 45 public: 46 MysqlAssemblyNameFilter(const QByteArray &expectedName); 47 virtual bool filter(const U2AssemblyRead &r); 48 49 protected: 50 QByteArray name; 51 }; 52 53 class MysqlSimpleAssemblyReadLoader : public MysqlRSLoader<U2AssemblyRead> { 54 public: 55 U2AssemblyRead load(U2SqlQuery *q); 56 }; 57 58 class MysqlSimpleAssemblyReadPackedDataLoader : public MysqlRSLoader<PackAlgorithmData> { 59 public: 60 virtual PackAlgorithmData load(U2SqlQuery *q); 61 }; 62 63 } // namespace U2 64 65 #endif // _U2_MYSQL_ASSEMBLY_ADAPTER_H_ 66