1 /** 2 * UGENE - Integrated Bioinformatics Tools. 3 * Copyright (C) 2008-2021 UniPro <ugene@unipro.ru> 4 * http://ugene.net 5 * 6 * This program is free software; you can redistribute it and/or 7 * modify it under the terms of the GNU General Public License 8 * as published by the Free Software Foundation; either version 2 9 * of the License, or (at your option) any later version. 10 * 11 * This program is distributed in the hope that it will be useful, 12 * but WITHOUT ANY WARRANTY; without even the implied warranty of 13 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the 14 * GNU General Public License for more details. 15 * 16 * You should have received a copy of the GNU General Public License 17 * along with this program; if not, write to the Free Software 18 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, 19 * MA 02110-1301, USA. 20 */ 21 22 #ifndef _U2_SW_WORKER_H_ 23 #define _U2_SW_WORKER_H_ 24 25 #include <U2Algorithm/SmithWatermanReportCallback.h> 26 #include <U2Algorithm/SmithWatermanSettings.h> 27 #include <U2Algorithm/SmithWatermanTaskFactory.h> 28 29 #include <U2Designer/DelegateEditors.h> 30 31 #include <U2Lang/LocalDomain.h> 32 #include <U2Lang/WorkflowUtils.h> 33 34 namespace U2 { 35 namespace LocalWorkflow { 36 37 class SWPrompter : public PrompterBase<SWPrompter> { 38 Q_OBJECT 39 public: 40 SWPrompter(Actor *p = 0) 41 : PrompterBase<SWPrompter>(p) { 42 } 43 44 protected: 45 QString composeRichDoc(); 46 }; 47 48 class SWAlgoEditor : public ComboBoxDelegate { 49 Q_OBJECT 50 public: SWAlgoEditor(ActorPrototype * proto)51 SWAlgoEditor(ActorPrototype *proto) 52 : ComboBoxDelegate(QVariantMap()), proto(proto) { 53 } 54 public slots: 55 void populate(); 56 57 private: 58 ActorPrototype *proto; 59 }; 60 61 class SWWorker : public BaseWorker { 62 Q_OBJECT 63 public: 64 SWWorker(Actor *a); 65 66 virtual void init(); 67 virtual bool isReady() const; 68 virtual Task *tick(); 69 virtual void cleanup(); 70 71 private slots: 72 void sl_taskFinished(Task *); 73 74 private: 75 IntegralBus *input, *patternPort, *output; 76 QMap<Task *, SmithWatermanReportCallbackAnnotImpl *> callbacks; 77 QList<QByteArray> patternList; 78 QMap<Task *, QByteArray> patterns; 79 QMap<QString, QString> patternNames; 80 }; 81 82 class SWWorkerFactory : public DomainFactory { 83 public: 84 static const QString ACTOR_ID; 85 static void init(); SWWorkerFactory()86 SWWorkerFactory() 87 : DomainFactory(ACTOR_ID) { 88 } createWorker(Actor * a)89 virtual Worker *createWorker(Actor *a) { 90 return new SWWorker(a); 91 } 92 }; 93 94 } // namespace LocalWorkflow 95 } // namespace U2 96 97 #endif 98