1 #ifndef H_Solo 2 #define H_Solo 3 #include "IncludeDefine.h" 4 #include "ReadAlignChunk.h" 5 #include "Transcriptome.h" 6 #include <fstream> 7 8 #include "SoloFeature.h" 9 10 11 class Solo { 12 private: 13 ReadAlignChunk **RAchunk; 14 Parameters &P; 15 Transcriptome &Trans; 16 17 public: 18 ParametersSolo &pSolo; 19 SoloFeature **soloFeat; 20 21 SoloReadBarcode *readBarSum; 22 23 Solo(ReadAlignChunk **RAchunk, Parameters &Pin, Transcriptome &inTrans); 24 25 Solo(Parameters &Pin, Transcriptome &inTrans);//for soloCellFiltering 26 27 void processAndOutput(); 28 }; 29 30 #endif 31