1LOCUS       NC_001363               5833 bp ss-RNA     linear   VRL 27-AUG-2002
2DEFINITION  Murine sarcoma virus, complete genome.
3ACCESSION   NC_001363
4VERSION     NC_001363.1  GI:9626100
5KEYWORDS    oncogene; polyprotein; unidentified reading frame.
6SOURCE      Murine sarcoma virus.
7  ORGANISM  Murine sarcoma virus
8            Viruses; Retroid viruses; Retroviridae; Mammalian type C
9            retroviruses; 1-Mammalian type C virus group.
10REFERENCE   1  (bases 1 to 5833)
11  AUTHORS   Van Beveren,C., van Straaten,F., Galleshaw,J.A. and Verma,I.M.
12  TITLE     Nucleotide sequence of the genome of a murine sarcoma virus
13  JOURNAL   Cell 27 (1 Pt 2), 97-108 (1981)
14  MEDLINE   82115347
15   PUBMED   6173134
16COMMENT     REVIEWED REFSEQ: This record has been curated by NCBI staff. The
17            reference sequence was derived from V01185.
18FEATURES             Location/Qualifiers
19     source          1..5833
20                     /organism="Murine sarcoma virus"
21                     /db_xref="taxon:11802"
22     misc_feature    2..590
23                     /note="5' terminal repeat"
24     CDS             1042..2658
25                     /codon_start=1
26                     /product="gag polyprotein"
27                     /protein_id="NP_040335.1"
28                     /db_xref="GI:9626101"
29                     /db_xref="SWISS-PROT:P03334"
30                     /translation="MGQTVTTPLSLTLDHWKDVERLAHNQSVDVKKRRWVTFCSAEWP
31                     TFNVGWPRDGTFNRDLITQVKIKVFSPGPHGHPDQVPYIVTWEALAFDPPPWVKPFVH
32                     PKPPPPLLPSAPSLPLEPPLSTPPQSSLYPALTPSLGAKPKPQVLSDSGGPLIDLLTE
33                     DPPPYRDPRPPPSDRDGDSGEATPAGEAPDPSPMASRLRGRREPPVADSTTSQAFPLR
34                     TGGNGQLQYWPFSSSDLYNWKNNNPSFSEDPGKLTALIESVLITHQPTWDDCQQLLGT
35                     LLTGEEKQRVLLEARKAVRGDDGRPTQLPNEVDAAFPLERPDWEYTTQAGRNHLVHYR
36                     QLLIAGLQNAGRSPTNLAKVKGITQGPNESPSAFLERLKEAYRRYTPYDPEDPGQETN
37                     VSMSFIWQSAPDIGRKLERLEDLRNKTLGDLVREAERIFNKRETPEEREERIRREREE
38                     KEERRRTEDEQKEKERDRRRHREMSRLLATVVSGQRQDRQEGERRRSQLDCDQCTYCE
39                     EQGHWAKDCPKRPRGPRGPRPQTSLLTLDD"
40     CDS             join(2970..3413,3412..3873)
41                     /note="Predicted by GeneMark; artificial frameshift"
42                     /codon_start=1
43                     /product="pol polyprotein fragment"
44                     /protein_id="NP_597742.2"
45                     /db_xref="GI:22507278"
46                     /translation="MVAAIAVLTKDAGKLTMGQPLVILAPHAVEALVKQPPDRWLSNA
47                     RMTHYQALLLDTDRVQFRPVVALNPATLLPLPEKGLQHNCLDILAEAHGTRPDLTDQP
48                     LPDADHTWYTDGSSLLQEGQRKAGAAVTTETEKPSQPRKKTAKVVNIFPRFGMLQVLG
49                     TDNGPAFVSKVSQTVADLLGIDWKLHCAYRPQSSGQVERINRTIKETLTKLTLATGSR
50                     DWVLLLPLALYRARNTPGPHGLTPYEILCGAPPPLVNFPDPDMTRVTNSPSLQAHIQA
51                     LYLVQHEVWRPLAAAYQEQLDHPLD"
52     CDS             3875..4999
53                     /codon_start=1
54                     /product="unknown reading frame (gene x)"
55                     /protein_id="NP_040336.1"
56                     /db_xref="GI:9626102"
57                     /db_xref="SPTREMBL:Q85651"
58                     /translation="MAHSTPCSQTSLAVPNHFSLVSHVTVPSEGVMPSPLSLCRYLPR
59                     ELSPSVDSRSCSIPLVAPRKAGKLFLGTTPPRAPGLPRRLAWFSIDWEQVCLMHRLGS
60                     GGFGSVYKATYHGVPVAIKQVNKCTEDLRASQRSFWAELNIAGLRHDNIVRVVAASTR
61                     TPEDSNSLGTIIMEFGGNVTLHQVIYDATRSPEPLSCRKQLSLGKCLKYSLDVVNGLL
62                     FLHSQSILHLDLKPANILISEQDVCKISDFGCSQKLQVLRGRQASPPHIGGTYTHQAP
63                     EILKGEIATPKADIYSFGITLWQMTTREVPYSGEPQYVQYAVVAYNLRPSLAGAVFTA
64                     SLTGKALQNIIQSCWEARGLQRPSAELLQRDLKAFRGTLG"
65     CDS             5048..5203
66                     /note="Predicted by GeneMark"
67                     /codon_start=1
68                     /product="spike protein fragment"
69                     /protein_id="NP_597744.1"
70                     /db_xref="GI:19263358"
71                     /translation="MGPLIVLLMILLFGPCILNRLVQFVKDRISVVQALALTQQYHQL
72                     KPIEYEP"
73     misc_feature    5245..5833
74                     /note="3' terminal repeat"
75BASE COUNT     1427 a   1673 c   1484 g   1249 t
76ORIGIN
77        1 aaatgaaaga ccccacccgt aggtggcaag ctagcttaag taacgccact ttgcaaggca
78       61 tggaaaaata cataactgag aatagaaaag ttcagatcaa ggtcaggaac aaagaaacag
79      121 ctgaatacca aacaggatat ctgtggtaag cggttcctgc cccggctcag ggccaagaac
80      181 agatgagaca gctgagtgat gggccaaaca ggatatctgt ggtaagcagt tcctgccccg
81      241 gctcggggcc aagaacagat ggtccccaga tgcggtccag ccctcagcag tttctagtga
82      301 atcatcagat gtttccaggg tgccccaagg acctgaaaat gaccctgtac cttatttgaa
83      361 ctaaccaatc agttcgcttc tcgcttctgt tcgcgcgctt ccgctctccg agctcaataa
84      421 aagagcccac aacccctcac tcggcgcgcc agtcttccga tagactgcgt cgcccgggta
85      481 cccgtattcc caataaagcc tcttgctgtt tgcatccgaa tcgtggtctc gctgttcctt
86      541 gggagggtct cctctgagtg attgactacc cacgacgggg gtctttcatt tgggggctcg
87      601 tccgggattt ggagacccct gcccagggac caccgaccca ccaccgggag gtaagctggc
88      661 cagcaactta tctgtgtctg tccgattgtc tagtgtctat gtttgatgtt atgcgcctgc
89      721 gtctgtacta gttagctaac atgctctgta tctggcggac ccgtggtgga actgacgagt
90      781 tctgaacacc cggccgcaac cctgggagac gtcccaggga ctttgggggc cgtttttgtg
91      841 gcccgacctg aggaagggag tcgatgtgga atccgacccc gtcaggatat gtggttctgg
92      901 taggagacga gaacctaaaa cagttcccgc ctccgtctga atttttgctt tcggtttgga
93      961 accgaagccg cgcgtcttgt ctgctgcagc atcgttctgt gttgtctctg tctgactgtg
94     1021 tttctgtatt tgtctgaaaa tatgggccag actgttacca ctcccttaag tttgacctta
95     1081 gatcactgga aagatgtcga gcggctcgct cacaaccagt cggtagatgt caagaagaga
96     1141 cgttgggtta ccttctgctc tgcagaatgg ccaaccttta acgtcggatg gccgcgagac
97     1201 ggcaccttta accgagacct catcacccag gttaagatca aggtcttttc acctggcccg
98     1261 catggacacc cagaccaggt cccctacatc gtgacctggg aagccttggc ttttgacccc
99     1321 cctccctggg tcaagccctt tgtacaccct aagcctccgc ctcctcttct tccatccgcg
100     1381 ccgtctctcc cccttgaacc tcctctttcg accccgcctc aatcctccct ttatccagcc
101     1441 ctcactcctt ctttgggcgc caaacctaaa cctcaagttc tttctgacag tggggggccg
102     1501 ctcatcgacc tacttacaga agaccccccg ccttataggg acccaagacc acccccttcc
103     1561 gacagggacg gagatagtgg agaagcgacc cctgcgggag aggcaccgga cccctcccca
104     1621 atggcatctc gcctgcgtgg gagacgggag ccccctgtgg ccgactccac tacctcgcag
105     1681 gcattccccc tccgcacagg aggaaacgga cagcttcaat actggccgtt ctcctcttct
106     1741 gacctttaca actggaaaaa taataaccct tctttttctg aagatccagg taaactgaca
107     1801 gctctgatcg agtctgtcct catcacccat cagcccacct gggacgactg tcagcagctg
108     1861 ttggggactc tgctgaccgg ggaagaaaaa caacgggtgc tcttagaggc tagaaaggcg
109     1921 gtgcggggcg atgatgggcg ccccactcaa ctgcccaatg aagtcgatgc cgcttttccc
110     1981 ctcgagcgcc cagactggga gtacaccacc caggcaggta ggaaccacct agtccactat
111     2041 cgccagttgc tcatagcggg tctccaaaac gcgggcagaa gccccaccaa tttggccaag
112     2101 gtaaaaggaa taacacaagg gcccaatgag tctccctcgg ccttcctaga gagacttaag
113     2161 gaagcctatc gcaggtacac tccttatgac cctgaggacc cagggcaaga aactaatgtg
114     2221 tctatgtctt tcatttggca gtctgcccca gacattggga gaaagttaga gaggttagaa
115     2281 gatttgagaa acaagacgct tggagatttg gttagagagg cagaaaggat ctttaataaa
116     2341 cgagaaaccc cggaagaaag agaggaacgt atcaggagag aaagagagga aaaggaagaa
117     2401 cgccgtagga cagaggatga gcagaaagag aaagaaagag atcgtaggag acatagagag
118     2461 atgagcaggc tattggccac tgtcgttagt ggacagagac aggatagaca ggaaggagaa
119     2521 cgaaggaggt cccaactcga ctgcgaccag tgtacctact gcgaagaaca agggcactgg
120     2581 gctaaagatt gtcccaagag accacgagga cctcggggac caagacccca gacctccctc
121     2641 ctgaccctag atgactaggg aggtcagggt caggagcccc cccctgaacc caggataacc
122     2701 ctcaaagtcg gggggcaacc cgtcaccttc ctggtagata ctggggccca gaccaacaaa
123     2761 aggcctatca agaaatcaag caagttcttc taactgcccc agccctgggg ttgccagatt
124     2821 tgactaagcc ctttgaactc tttgtcgacg agaagcaggg ctacgccaaa ggtgtcctaa
125     2881 cgcaaaaact gggaccttgg cgtcggccgg tggcctacct gtccaaacag ctagacccag
126     2941 tagcagctgg gtgaccccct tgcctacgga tggtagcagc cattgccgta ctgacaaagg
127     3001 atgcaggcaa gctaaccatg ggacagccac tagtcattct ggccccccat gcagtagagg
128     3061 cactagtcaa acaacccccc gaccgctggc tttccaacgc ccggatgact cactatcagg
129     3121 ccttgctttt ggacacggac cgggtccagt tcagaccggt ggtagccctg aacccggcta
130     3181 cgctgctccc actgcctgag aaagggctgc aacacaactg ccttgatatc ctggccgaag
131     3241 ctcatggaac ccgacccgac ctaacggacc agccgctccc agacgccgac cacacctggt
132     3301 acacggatgg aagcagtctt ttacaagagg gacagcgtaa ggcgggagct gcggtgacca
133     3361 ccgagaccga gaagccttcc caaccaagaa aaaaaaccgc caaggtcgta aatcttcccc
134     3421 aggttcggca tgcttcaggt attgggaact gacaatgggc ctgccttcgt ctccaaggtg
135     3481 agtcagacag tggccgatct gttggggatt gattggaaat tacattgtgc atacagaccc
136     3541 caaagctcag gccaggtaga aagaataaat agaaccatca aggagacttt aactaaatta
137     3601 acgcttgcaa ctggctctag ggactgggtg ctcctactcc ccttagccct gtatcgagcc
138     3661 cgcaacacgc cgggccccca tggcctcacc ccatatgaga tcttatgtgg ggcacccccg
139     3721 ccccttgtaa acttccctga ccctgacatg acaagagtta ctaacagccc ctctctccaa
140     3781 gctcacatac aggctctcta cttagtccag cacgaagtct ggagacctct ggcggcagcc
141     3841 taccaagaac aactggacca tcctctagac tgacatggcg cattcaacgc catgctccca
142     3901 aacttccctg gctgttccta atcatttctc cctagtgtct catgtgactg tcccatctga
143     3961 gggtgtaatg ccttcgcctc taagcctgtg tcgctacctc cctcgtgagc tgtcgccatc
144     4021 ggtagactcg cggtcctgca gcattccttt ggtggccccg aggaaggcag ggaagctctt
145     4081 cctggggacc actcctcctc gggctcccgg actgccacgc cggctggcct ggttctccat
146     4141 agactgggaa caggtatgtc tgatgcatag gctgggctct ggagggtttg gctcggtgta
147     4201 caaagccact taccacggtg ttcctgtggc catcaagcaa gtaaacaagt gcaccgagga
148     4261 cctacgtgca tcccagcgga gtttctgggc tgaactgaac attgcaggac tacgccacga
149     4321 caacatagtt cgggttgtgg ctgccagcac gcgcacgccc gaagactcca acagcctagg
150     4381 taccataatc atggagtttg ggggcaacgt gactctacac caagtcatct acgatgccac
151     4441 ccgctcaccg gagcctctca gctgcagaaa acaactaagt ttggggaagt gcctcaagta
152     4501 ttccctagat gttgttaacg gcctgctttt tctccactca caaagcattt tgcacttgga
153     4561 cctgaagcca gcgaacattt tgattagtga gcaggacgtt tgtaagatca gtgacttcgg
154     4621 ctgctcccag aagctgcagg ttctgcgggg ccggcaggcg tcccctcccc acataggggg
155     4681 cacgtacacg caccaagctc cggagatcct aaaaggagag attgccacgc ccaaagctga
156     4741 catctactct tttggaatca ccctgtggca gatgactacc agagaggtgc cttactccgg
157     4801 cgaacctcag tacgtgcagt atgcagtggt agcctacaat ctgcgtccct cactggcagg
158     4861 agcggtgttc accgcctccc tgactggaaa ggcactgcag aacatcatcc agagctgctg
159     4921 ggaggcccgc ggcctgcaga ggccgagtgc agaactgctc caaagggacc tcaaggcttt
160     4981 ccgagggaca ctaggctgac tccatcgagc cagtgtagag ataagctttt gtttctgttt
161     5041 attttttatg ggacccctta ttgtactcct aatgattttg ctcttcggac cctgcattct
162     5101 taatcgatta gtccaatttg ttaaagacag gatatcagtg gtccaggctc tagctttgac
163     5161 tcaacaatat caccagctga agcctataga gtacgagcca tagttaaaat aaaagatttt
164     5221 atttagtctc cagaaaaagg ggggaatgaa agaccccacc cgtaggtggc aagctagctt
165     5281 aagtaacgcc actttgcaag gcatggaaaa atacataact gagaatagaa aagttcagat
166     5341 caaggtcagg aacaaagaaa cagctgaata ccaaacagga tatctgtggt aagcggttcc
167     5401 tgccccggct cagggccaag aacagatgag acagctgagt gatgggccaa acaggatatc
168     5461 tgtggtaagc agttcctgcc ccggctcggg gccaagaaca gatggtcccc agatgcggtc
169     5521 cagccctcag cagtttctag tgaatcatca gatgtttcca gggtgcccca aggacctgaa
170     5581 aatgaccctg taccttattt gaactaacca atcagttcgc ttctcgcttc tgttcgcgcg
171     5641 cttccgctct ccgagctcaa taaaagagcc cacaacccct cactcggcgc gccagtcttc
172     5701 cgatagactg cgtcgcccgg gtacccgtat tcccaataaa gcctcttgct gtttgcatcc
173     5761 gaatcgtggt ctcgctgttc cttgggaggg tctcctctga gtgattgact acccacgacg
174     5821 ggggtctttc att
175//
176