1 /***************************************************************************** 2 * gbfeatdfn.h: 3 * -- GenBank Feature table define file 4 * 5 ******************************************************************************/ 6 #ifndef _GBFEATDFN_ 7 #define _GBFEATDFN_ 8 9 10 #define GBQUAL_allele 0 11 #define GBQUAL_anticodon 1 12 #define GBQUAL_bound_moiety 2 13 #define GBQUAL_cell_line 3 14 #define GBQUAL_cell_type 4 15 #define GBQUAL_chromosome 5 16 #define GBQUAL_chloroplast 6 17 #define GBQUAL_chromoplast 7 18 #define GBQUAL_citation 8 19 #define GBQUAL_clone 9 20 #define GBQUAL_clone_lib 10 21 #define GBQUAL_codon 11 22 #define GBQUAL_codon_start 12 23 #define GBQUAL_cons_splice 13 24 #define GBQUAL_cultivar 14 25 #define GBQUAL_cyanelle 15 26 #define GBQUAL_db_xref 16 27 #define GBQUAL_dev_stage 17 28 #define GBQUAL_direction 18 29 #define GBQUAL_EC_number 19 30 #define GBQUAL_evidence 20 31 #define GBQUAL_exception 21 32 #define GBQUAL_frequency 22 33 #define GBQUAL_function 23 34 #define GBQUAL_gene 24 35 #define GBQUAL_gdb_xref 25 36 #define GBQUAL_germline 26 37 #define GBQUAL_haplotype 27 38 #define GBQUAL_insertion_seq 28 39 #define GBQUAL_isolate 29 40 #define GBQUAL_kinetoplast 30 41 #define GBQUAL_label 31 42 #define GBQUAL_lab_host 32 43 #define GBQUAL_map 33 44 #define GBQUAL_macronuclear 34 45 #define GBQUAL_mitochondrion 35 46 #define GBQUAL_mod_base 36 47 #define GBQUAL_note 37 48 #define GBQUAL_number 38 49 #define GBQUAL_organism 39 50 #define GBQUAL_partial 40 51 #define GBQUAL_PCR_conditions 41 52 #define GBQUAL_pop_variant 42 53 #define GBQUAL_phenotype 43 54 #define GBQUAL_plasmid 44 55 #define GBQUAL_product 45 56 #define GBQUAL_proviral 46 57 #define GBQUAL_pseudo 47 58 #define GBQUAL_rearranged 48 59 #define GBQUAL_replace 49 60 #define GBQUAL_rpt_family 50 61 #define GBQUAL_rpt_type 51 62 #define GBQUAL_rpt_unit 52 63 #define GBQUAL_sex 53 64 #define GBQUAL_sequenced_mol 54 65 #define GBQUAL_serotype 55 66 #define GBQUAL_specific_host 56 67 #define GBQUAL_standard_name 57 68 #define GBQUAL_strain 58 69 #define GBQUAL_sub_clone 59 70 #define GBQUAL_sub_species 60 71 #define GBQUAL_sub_strain 61 72 #define GBQUAL_tissue_lib 62 73 #define GBQUAL_tissue_type 63 74 #define GBQUAL_translation 64 75 #define GBQUAL_transl_except 65 76 #define GBQUAL_transl_table 66 77 #define GBQUAL_transposon 67 78 #define GBQUAL_usedin 68 79 #define GBQUAL_variety 69 80 #define GBQUAL_virion 70 81 #define GBQUAL_focus 71 82 #define GBQUAL_specimen_voucher 72 83 #define GBQUAL_protein_id 73 84 #define GBQUAL_country 74 85 #define GBQUAL_organelle 75 86 #define GBQUAL_transcript_id 76 87 #define GBQUAL_transgenic 77 88 #define GBQUAL_environmental_sample 78 89 #define GBQUAL_isolation_source 79 90 #define GBQUAL_serovar 80 91 #define GBQUAL_locus_tag 81 92 #define GBQUAL_mol_type 82 93 #define GBQUAL_segment 83 94 #define GBQUAL_ecotype 84 95 #define GBQUAL_estimated_length 85 96 #define GBQUAL_operon 86 97 #define GBQUAL_old_locus_tag 87 98 #define GBQUAL_compare 88 99 #define GBQUAL_experiment 89 100 #define GBQUAL_inference 90 101 #define GBQUAL_rpt_unit_seq 91 102 #define GBQUAL_rpt_unit_range 92 103 #define GBQUAL_ribosomal_slippage 93 104 #define GBQUAL_trans_splicing 94 105 #define GBQUAL_collected_by 95 106 #define GBQUAL_collection_date 96 107 #define GBQUAL_identified_by 97 108 #define GBQUAL_lat_lon 98 109 #define GBQUAL_PCR_primers 99 110 #define GBQUAL_mobile_element 100 111 #define GBQUAL_metagenomic 101 112 #define GBQUAL_culture_collection 102 113 #define GBQUAL_bio_material 103 114 #define GBQUAL_ncRNA_class 104 115 #define GBQUAL_tag_peptide 105 116 #define GBQUAL_mating_type 106 117 #define GBQUAL_satellite 107 118 #define GBQUAL_gene_synonym 108 119 #define GBQUAL_UniProtKB_evidence 109 120 #define GBQUAL_haplogroup 110 121 #define GBQUAL_artificial_location 111 122 #define GBQUAL_non_functional 112 123 #define GBQUAL_pseudogene 113 124 #define GBQUAL_mobile_element_type 114 125 #define GBQUAL_gap_type 115 126 #define GBQUAL_linkage_evidence 116 127 #define GBQUAL_altitude 117 128 #define GBQUAL_metagenome_source 118 129 #define GBQUAL_type_material 119 130 #define GBQUAL_regulatory_class 120 131 #define GBQUAL_recombination_class 121 132 133 #define ParFlat_TOTAL_GBQUAL 122 134 #define ParFlat_TOTAL_IntOr 3 135 #define ParFlat_TOTAL_LRB 3 136 #define ParFlat_TOTAL_Exp 2 137 #define ParFlat_TOTAL_Rpt 15 138 #define ParFlat_TOTAL_GBFEAT 75 139 140 #define Class_pos_aa 1 141 #define Class_text 2 142 #define Class_bracket_int 3 143 #define Class_seq_aa 4 144 #define Class_int_or 5 145 #define Class_site 6 146 #define Class_L_R_B 7 147 #define Class_ecnum 8 148 #define Class_exper 9 149 #define Class_none 10 150 #define Class_token 11 151 #define Class_int 12 152 #define Class_rpt 13 153 #define Class_flabel_base 14 154 #define Class_flabel_dbname 15 155 #define Class_note 16 156 #define Class_number 17 157 158 159 #define ParFlat_Stoken_type 1 160 #define ParFlat_BracketInt_type 2 161 #define ParFlat_Integer_type 3 162 #define ParFlat_Number_type 4 163 164 /*********************************************************************/ 165 166 typedef struct sematic_gbfeature { 167 CharPtr key; 168 Int2 mand_num; 169 Int2 mand_qual[5]; 170 Int2 opt_num; 171 Int2 opt_qual[65]; 172 } SematicFeat, PNTR SematicFeatPtr; 173 174 typedef struct gbfeat_name { 175 CharPtr name; 176 Uint1 gbclass; 177 } GbFeatName, PNTR GbFeatNamePtr; 178 179 #undef NLM_EXTERN 180 #ifdef NLM_IMPORT 181 #define NLM_EXTERN NLM_IMPORT 182 #else 183 #define NLM_EXTERN extern 184 #endif 185 186 NLM_EXTERN GbFeatNamePtr x_ParFlat_GBQual_names PROTO((void)); 187 #define ParFlat_GBQual_names x_ParFlat_GBQual_names() 188 189 NLM_EXTERN SematicFeatPtr x_ParFlat_GBFeat PROTO((void)); 190 #define ParFlat_GBFeat x_ParFlat_GBFeat() 191 192 NLM_EXTERN ValNodePtr Validate_ParFlat_GBFeat (void); 193 194 extern CharPtr ParFlat_IntOrString [ParFlat_TOTAL_IntOr]; 195 extern CharPtr ParFlat_LRBString [ParFlat_TOTAL_LRB]; 196 extern CharPtr ParFlat_ExpString [ParFlat_TOTAL_Exp]; 197 extern CharPtr ParFlat_RptString [ParFlat_TOTAL_Rpt]; 198 199 #undef NLM_EXTERN 200 #ifdef NLM_EXPORT 201 #define NLM_EXTERN NLM_EXPORT 202 #else 203 #define NLM_EXTERN 204 #endif 205 206 #endif 207