1TBLASTX 2.1.2 [Oct-19-2000]
2
3
4Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
5Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
6"Gapped BLAST and PSI-BLAST: a new generation of protein database search
7programs",  Nucleic Acids Res. 25:3389-3402.
8
9Query= HUMBETGLOA Human haplotype C4 beta-globin gene, complete cds.
10         (3002 letters)
11
12Database: ecoli.nt
13           400 sequences; 4,662,239 total letters
14
15Searching.................................................done
16
17                                                                   Score     E
18Sequences producing significant alignments:                        (bits)  Value
19
20gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 ...    34  0.13
21gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 ...    31  0.61
22gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 ...    31  0.84
23gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 o...    29  2.2
24gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 ...    29  3.0
25gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 ...    29  3.0
26gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 ...    29  3.0
27gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 ...    29  3.0
28gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 ...    26  3.4
29gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 ...    29  4.1
30gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 ...    29  4.1
31gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 o...    29  4.1
32gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 ...    29  4.1
33gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 o...    29  4.1
34gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 ...    28  5.7
35gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 ...    28  7.8
36gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 ...    28  7.8
37gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 ...    28  7.8
38gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 o...    28  7.8
39gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 o...    28  7.8
40
41>gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 of 400 of the complete
42            genome
43          Length = 10934
44
45 Score = 33.6 bits (67), Expect = 0.13
46 Identities = 11/26 (42%), Positives = 16/26 (61%)
47 Frame = +1 / -2
48
49
50Query: 1057 SAYWSIFPPLGCWWSTLGPRGSLSPL 1134
51            +A W++FPP+G  W  L  +   SPL
52Sbjct: 5893 AAVWALFPPVGSQWGCLASQWRTSPL 5816
53
54
55>gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 of 400 of the complete
56            genome
57          Length = 10264
58
59 Score = 31.3 bits (62), Expect = 0.61
60 Identities = 8/17 (47%), Positives = 13/17 (76%)
61 Frame = +2 / +2
62
63
64Query: 2177 WSVCWPITLAKNSPHQC 2227
65            +  CWP+ L ++SP+QC
66Sbjct: 1157 YPACWPLPLRRSSPYQC 1207
67
68
69>gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 of 400 of the complete
70            genome
71          Length = 11653
72
73 Score = 30.8 bits (61), Expect = 0.84
74 Identities = 9/25 (36%), Positives = 14/25 (56%)
75 Frame = +2 / -3
76
77
78Query: 2174 CWSVCWPITLAKNSPHQCRLPIRKW 2248
79            CW     + L K+ P QCR+ + +W
80Sbjct: 4931 CWLTASVLRLQKSLPRQCRITVVRW 4857
81
82
83>gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 of 400 of the complete genome
84          Length = 12663
85
86 Score = 29.5 bits (58), Expect = 2.2
87 Identities = 12/41 (29%), Positives = 24/41 (58%)
88 Frame = -1 / +1
89
90
91Query: 2813 KEHFRGKVVSLSKRTEWSQG*EMQDKQMGSEKTFMRTAKTI 2691
92            K H RG+ V + ++   ++  E+ D++ G+ +   RT +TI
93Sbjct: 13   KRHLRGE*VKVGEKYITARRGELPDQEPGNGEASYRTMRTI 135
94
95
96>gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 of 400 of the complete
97            genome
98          Length = 14295
99
100 Score = 29.0 bits (57), Expect = 3.0
101 Identities = 7/18 (38%), Positives = 10/18 (54%)
102 Frame = +2 / +3
103
104
105Query: 2165 WATCWSVCWPITLAKNSP 2218
106            W TCW+ CW      ++P
107Sbjct: 9096 WITCWNCCWQAGWISSAP 9149
108
109
110>gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 of 400 of the complete
111            genome
112          Length = 10944
113
114 Score = 29.0 bits (57), Expect = 3.0
115 Identities = 17/39 (43%), Positives = 20/39 (50%)
116 Frame = -3 / +1
117
118
119Query: 1020 LSPHAQFLLVSLNLSCNLDTNLPRASPPTSSTFTLPHRA 904
120            L+  A FLLV + +S   DT LPR    T  TF    RA
121Sbjct: 7618 LTSTAAFLLV*VKISRACDTFLPRIRSATRRTF*AEERA 7734
122
123
124>gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 of 400 of the complete
125            genome
126          Length = 10426
127
128 Score = 29.0 bits (57), Expect = 3.0
129 Identities = 10/28 (35%), Positives = 12/28 (42%)
130 Frame = +2 / +3
131
132
133Query: 2165 WATCWSVCWPITLAKNSPHQCRLPIRKW 2248
134            WA CW  C  + +A NS    R     W
135Sbjct: 750  WACCWRTCSLVVVALNSLRAVRQSSTSW 833
136
137
138>gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 of 400 of the complete
139           genome
140          Length = 10098
141
142 Score = 29.0 bits (57), Expect = 3.0
143 Identities = 9/27 (33%), Positives = 18/27 (66%)
144 Frame = -3 / -1
145
146
147Query: 633 PPSKIYLLAPYHQYKLLLKTSSFASVF 553
148           PP++ YLL+P H+++++   S +   F
149Sbjct: 309 PPARFYLLSPVHEWRVIAS*SWYHQSF 229
150
151
152>gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 of 400 of the complete
153            genome
154          Length = 10208
155
156 Score = 26.3 bits (51), Expect(2) = 3.4
157 Identities = 11/26 (42%), Positives = 14/26 (53%)
158 Frame = +3 / +2
159
160
161Query: 2796 SPEVFLPCFTARWFLLAWPLSLSCLC 2873
162            S  V L C T  ++L  W L+LS  C
163Sbjct: 5579 SSAVVLRCLTTVFWLPVWALTLSICC 5656
164
165
166 Score = 20.3 bits (38), Expect(2) = 3.4
167 Identities = 4/11 (36%), Positives = 7/11 (63%)
168 Frame = +3 / +1
169
170
171Query: 2892 LKKEKQGSWFD 2924
172            +K+  +G W D
173Sbjct: 5737 MKRPFKGDWLD 5769
174
175
176>gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 of 400 of the complete genome
177          Length = 20906
178
179 Score = 28.6 bits (56), Expect = 4.1
180 Identities = 14/48 (29%), Positives = 19/48 (39%)
181 Frame = +3 / +1
182
183
184Query: 660   SQCQKSQGQVRLSSLRPHPVEPHPRVGQSTPRSREGRSQGWA*KSGQS 803
185             S+C    G  R    RP  + P       +P    GR +GW    GQ+
186Sbjct: 20239 SRCALILGPARRWVHRPESLSPAASAHGQSPHVAAGRRRGWKRADGQN 20382
187
188
189>gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 of 400 of the complete
190            genome
191          Length = 10231
192
193 Score = 28.6 bits (56), Expect = 4.1
194 Identities = 12/20 (60%), Positives = 13/20 (65%)
195 Frame = -2 / +2
196
197
198Query: 2995 PGD*HCRFRVTVSGGGREEG 2936
199            PG  H  +R TVSG GRE G
200Sbjct: 7538 PGWLHAVYRETVSGSGREAG 7597
201
202
203>gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 of 400 of the complete genome
204          Length = 11639
205
206 Score = 28.6 bits (56), Expect = 4.1
207 Identities = 11/22 (50%), Positives = 15/22 (68%)
208 Frame = +1 / +3
209
210
211Query: 2332  FPKSNY*TGGYYEGP*ASGFCL 2397
212             F +S  * GGY+ GP +S FC+
213Sbjct: 10947 FQRSGG*PGGYHAGPGSSPFCV 11012
214
215
216>gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 of 400 of the complete
217            genome
218          Length = 11438
219
220 Score = 28.6 bits (56), Expect = 4.1
221 Identities = 8/27 (29%), Positives = 13/27 (47%)
222 Frame = +3 / -2
223
224
225Query: 1332 CFLSPSFLWLSSCHRKGISNRVQFRMG 1412
226            C  + +F+W + CH+  I     F  G
227Sbjct: 7990 CLFAAAFVWFAKCHQPVIGRNTTFSKG 7910
228
229
230>gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 of 400 of the complete genome
231          Length = 16823
232
233 Score = 28.6 bits (56), Expect = 4.1
234 Identities = 11/23 (47%), Positives = 12/23 (51%)
235 Frame = -2 / +1
236
237
238Query: 2860  RLSGQARRNHLAVKHGRNTSGER 2792
239             RLSG+ RR   A  H    SG R
240Sbjct: 13873 RLSGKVRRRGSAASHFLYLSGSR 13941
241
242
243>gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 of 400 of the complete
244            genome
245          Length = 10048
246
247 Score = 28.1 bits (55), Expect = 5.7
248 Identities = 9/19 (47%), Positives = 12/19 (62%)
249 Frame = +1 / +2
250
251
252Query: 1231 WTTSRAPLPH*VSCTVTSC 1287
253            W  S  P+PH   C+V+SC
254Sbjct: 2426 WRQSLYPIPHCYRCSVSSC 2482
255
256
257>gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 of 400 of the complete
258            genome
259          Length = 10264
260
261 Score = 27.6 bits (54), Expect = 7.8
262 Identities = 8/18 (44%), Positives = 10/18 (55%)
263 Frame = +3 / +3
264
265
266Query: 2670 YAVFYITYCFSCPHECLF 2723
267            +   + T C SCPH C F
268Sbjct: 4278 FITLHFT*CVSCPHNCSF 4331
269
270
271>gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 of 400 of the complete
272           genome
273          Length = 10589
274
275 Score = 27.6 bits (54), Expect = 7.8
276 Identities = 8/17 (47%), Positives = 12/17 (70%)
277 Frame = -2 / -3
278
279
280Query: 682 PWLFWHWLRSWTSNPQP 632
281           P L W+W+R   S+P+P
282Sbjct: 261 PSLLWYWVRRCLSSPRP 211
283
284
285>gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 of 400 of the complete
286            genome
287          Length = 10446
288
289 Score = 27.6 bits (54), Expect = 7.8
290 Identities = 7/18 (38%), Positives = 12/18 (65%)
291 Frame = +3 / +1
292
293
294Query: 1341 SPSFLWLSSCHRKGISNR 1394
295            +P+  W+S CHR+ +  R
296Sbjct: 136  TPAGCWISGCHRRSVQQR 189
297
298
299>gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 of 400 of the complete genome
300          Length = 10751
301
302 Score = 27.6 bits (54), Expect = 7.8
303 Identities = 13/47 (27%), Positives = 23/47 (48%)
304 Frame = +1 / +3
305
306
307Query: 1156 LLWATLR*RLMARKCSVPLVMAWLTWTTSRAPLPH*VSCTVTSCTWI 1296
308            +L  T R    A   +  +V +   WT S  P P  + C+++S +W+
309Sbjct: 1554 ILRLTYRLPTWAEPVTWAMVSSMRVWTPSVRP*PEALICSISSGSWL 1694
310
311
312>gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 of 400 of the complete genome
313          Length = 10619
314
315 Score = 27.6 bits (54), Expect = 7.8
316 Identities = 10/25 (40%), Positives = 15/25 (60%)
317 Frame = -3 / +3
318
319
320Query: 981  LSCNLDTNLPRASPPTSSTFTLPHR 907
321            ++C L      + P  ++TFTLPHR
322Sbjct: 2829 VACTLTCKYRLSLPQRANTFTLPHR 2903
323
324
325  Database: ecoli.nt
326    Posted date:  Jun 14, 2001  3:27 PM
327  Number of letters in database: 4,662,239
328  Number of sequences in database:  400
329
330Lambda     K      H
331   0.318    0.135    0.401
332
333
334Matrix: BLOSUM62
335Number of Hits to DB: 31907970
336Number of Sequences: 400
337Number of extensions: 491769
338Number of successful extensions: 23184
339Number of sequences better than 10.0: 20
340length of query: 1000
341length of database: 1,554,079
342effective HSP length: 47
343effective length of query: 953
344effective length of database: 1,535,279
345effective search space: 1463120887
346effective search space used: 1463120887
347frameshift window, decay const: 50,  0.1
348T: 13
349A: 40
350X1: 16 ( 7.3 bits)
351X2: 0 ( 0.0 bits)
352S1: 41 (21.7 bits)
353S2: 53 (27.2 bits)
354