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Searched refs:CGT (Results 1 – 25 of 905) sorted by relevance

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/dports/biology/emboss/EMBOSS-6.6.0/test/data/
H A Ddna.fitch2 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
3 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
5 ACG TAC GTA CGT ACG TAC GT. ... ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
6 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT TGC AAC GTA CGT
8 ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TCG TAC GTA CGT ACG TAC GTA
9 CGT ACG TAC GTA CGT ACG TAA CGT ACG TAC GTA CGT ACG TAC GTA CGT ACG TAC GTA CGT
/dports/science/py-DendroPy/DendroPy-4.4.0/tests/data/chars/
H A Dstandard-test-chars-dna.multi.nexus45 b {ACT}{AG}{ACGT}{ACGT-}{CT}{CGT}{CGT}{AT}{ACGT}.{AT}{ACG}T{CGT}GG{CG}{ACGT}{CGT}.{AG}.{CT}.{ACG…
53 k .{AG}{ACT}{CG}A.{CGT}.{ACGT-}{AG}G{CGT}{CGT}.G.C{ACGT}{AC}..{ACGT-}{GT}{AG}{AGT}.{CGT}{ACGT-}{…
68 j {CGT}.{CGT}{AT}{AT}{AG}{CGT}.{ACGT}.{CG}{CG}{AC}C.{ACT}{CGT}.-{AG}{CGT}{ACT}{CT}{AT}{CGT}A.{AC…
73 …ACGT}..{AGT}{AG}{AG}{CT}{ACG}.{AC}{ACG}{CT}{CGT}{ACG}C{CGT}G{AG}{AT}{CT}{ACT}.{CGT}{ACG}{CG}{AGT}{…
80 f {CGT}{ACG}{ACGT-}.{ACG}{AG}..{CGT}{AGT}{CG}--.{CGT}{AGT}{AGT}.{AG}..{CGT}A-{CG}-.{GT}{AG}{CT}.…
89 …T}.{AT}A.{AGT}T{GT}{AT}{AG}.{AT}-{GT}{ACG}{ACG}.{ACT}A.{AC}-{AT}.{AT}{CGT}{CGT}.{CGT}{CGT}.T.{CT}.G
93 …CGT}A{ACG}{AG}{ACG}{CG}{ACT}.{CGT}T.G{CG}.{GT}.-{AG}{ACGT}{CGT}{AG}{AC}{AG}{ACGT-}{ACGT-}{AG}TC{AT…
94 …{AGT}.{GT}.{AG}{CT}{AT}{CT}.{CGT}{ACG}.T{ACGT}{CGT}.{AGT}.{AT}{AG}.{AC}{CGT}{CGT}.{ACGT-}T{AG}.{AC…
96 f {CGT}G{AC}{AGT}{AC}{CGT}{AC}{AC}C{CG}{ACT}A.{ACGT}{CGT}.{CG}.{CG}C{ACGT}{AG}.G.T{GT}{AT}{ACGT}…
106 …}T.{AGT}.C..T..{GT}{GT}{AT}{CG}{ACGT}{ACT}{CT}{CGT}A.{ACT}..{CGT}{AT}{AG}.{GT}{AG}{AT}-{CGT}{CGT}{…
[all …]
/dports/biology/paml/paml4.9j/examples/lysin/
H A Dlysin.nuc9 …CGT TTT ATT CCA CAT AAG TAT ATA CGC AAG GAG TTT GAA GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GA…
12 …CGT CAT GGC AGG CGT TTA AGC GCA ATT CAG AAG AAG ACG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
13 …CGT CAT GGC AAG TAT GTG AGC GCA ATT CAG AGG AAG TCG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
15 …CGT TTT GAA GCT GCA CTG AAG GTC CAG ATC ATT CTT GGG TTT GAT AAA AAG TTG GCC ACC TGG CTT GCA CGT TA…
18 …CGT CTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTA CAG ATC ATC GCT GGG TTT GAT AGA AAA TTG TCT GGC TG…
19 …CGT TTT TAT TTT ATT AGG CAC CAG TAT CTT GCC AAG CCA TTT GAA GTT GCA CTC AAG GTA CAG ATC GTT GCT GG…
20 …CGT TGG GCC TTT ATT CCC CCC ACA CGT ATT CCC AGG GCT CAT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GG…
21 …CGT CTA AAC AGG GCT TTT GAA GTT GCA CTG AAG GTG CAG ATC ATC GCT GGG TTT GAT AGA AAG CTG ACC AGC TG…
22 …CGT TGG ACC TTT ATT CCG CGC AAA CGT CTT CCG ATG GCT CAT GAA GTT GCA TTA AAG GTA GAG ATC ATT GCT GG…
23 …CGT TGG AGA TTT GTT CCC CAC GTA CAA GTT AAC AGG TCT TTT GAA GTG GCA CTG AAG GTA CAG ATC ATT GCT GG…
[all …]
H A DlysinYangSwanson2002.nuc12 …CGT TTT ATT CCA CAT AAG TAT ATA CGC AAG GAG TTT GAA GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GA…
15 …CGT CAT GGC AGG CGT TTA AGC GCA ATT CAG AAG AAG ACG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
16 …CGT CAT GGC AAG TAT GTG AGC GCA ATT CAG AGG AAG TCG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
17 …CGT CAT GGC AGG CAT CTA AGC GCA ATT CAG AAG AAG TCG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
18 …CGT TTT GAA GCT GCA CTG AAG GTC CAG ATC ATT CTT GGG TTT GAT AAA AAG TTG GCC ACC TGG CTT GCA CGT TA…
21 …CGT CTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTA CAG ATC ATC GCT GGG TTT GAT AGA AAA TTG TCT GGC TG…
22 …CGT TTT TAT TTT ATT AGG CAC CAG TAT CTT GCC AAG CCA TTT GAA GTT GCA CTC AAG GTA CAG ATC GTT GCT GG…
23 …CGT TGG GCC TTT ATT CCC CCC ACA CGT ATT CCC AGG GCT CAT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GG…
25 …CGT TGG ACC TTT ATT CCG CGC AAA CGT CTT CCG ATG GCT CAT GAA GTT GCA TTA AAG GTA GAG ATC ATT GCT GG…
26 …CGT TGG AGA TTT GTT CCC CAC GTA CAA GTT AAC AGG TCT TTT GAA GTG GCA CTG AAG GTA CAG ATC ATT GCT GG…
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/PAML/Alignments/
H A DlysinYangSwanson2002.nuc12 …CGT TTT ATT CCA CAT AAG TAT ATA CGC AAG GAG TTT GAA GTT GCA CTG AAG GTA GAG ATC ATT GCC GGA TTC GA…
15 …CGT CAT GGC AGG CGT TTA AGC GCA ATT CAG AAG AAG ACG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
16 …CGT CAT GGC AAG TAT GTG AGC GCA ATT CAG AGG AAG TCG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
17 …CGT CAT GGC AGG CAT CTA AGC GCA ATT CAG AAG AAG TCG CTG TAC TTC GTT AAT AGG CGT TAC ATG CAG ACT CA…
18 …CGT TTT GAA GCT GCA CTG AAG GTC CAG ATC ATT CTT GGG TTT GAT AAA AAG TTG GCC ACC TGG CTT GCA CGT TA…
21 …CGT CTT GCC AGG CAA TTT GAA GTT GCA CTG AAG GTA CAG ATC ATC GCT GGG TTT GAT AGA AAA TTG TCT GGC TG…
22 …CGT TTT TAT TTT ATT AGG CAC CAG TAT CTT GCC AAG CCA TTT GAA GTT GCA CTC AAG GTA CAG ATC GTT GCT GG…
23 …CGT TGG GCC TTT ATT CCC CCC ACA CGT ATT CCC AGG GCT CAT GAA GTT GCA CTG AAG GTA CAG ATC ATT GCT GG…
25 …CGT TGG ACC TTT ATT CCG CGC AAA CGT CTT CCG ATG GCT CAT GAA GTT GCA TTA AAG GTA GAG ATC ATT GCT GG…
26 …CGT TGG AGA TTT GTT CCC CAC GTA CAA GTT AAC AGG TCT TTT GAA GTG GCA CTG AAG GTA CAG ATC ATT GCT GG…
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A Dcodeml45b.mlc3 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
4 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
5 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
6 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
7 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
8 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
9 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
10 …CGT TAT AAG GGA CGA TGC TAC GAC ATC GAG CCC GTT GCT GGA GAA GAA AAT CAA TTT ATT GCT TAT GTA GCT TA…
49 Leu CTT 9 9 9 9 9 9 | Pro CCT 11 11 12 11 10 12 | His CAT 9 9 9 9 9 9 | Arg CGT 11 11 1…
71 Leu CTT 9 9 9 | Pro CCT 10 11 11 | His CAT 9 9 9 | Arg CGT 11 11 11
[all …]
/dports/biology/p5-Bio-NEXUS/Bio-NEXUS-0.78/t/data/compliant/
H A DOmland-Orioles.nex2159 I.bonana.ND.1097 CGT TAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CNT
2162 I.cayanensis.cayanensis.KJ CGT CAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
2163 I.cayanensis.chryso.1297 CGT CAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
2164 I.cayanensis.peri.ND.997 CGT CAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
2165 I.cayanensis.pyrr.1297 CGT CAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
2173 I.dominicensis.port.1297 CGT TAT GTC CAT CGT ACT TCT CCC CGT CTC ACC TAT AAT TCT CAC CAT
2174 I.dom.prosthem.298 CGT TAT GTC CAT CGT ACT TCT CCC CGT CTC GCC CAT AAT TCT CAC CAT
2183 I.icterus.ridge.198b CGT TGT ATC CAT CGT ACT TCT CCC CGT CTC CCC CAT AAT TCT CAC CAT
2185 I.laudabilis.ND.1097 CGT TAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
2193 I.oberi_1297_text CGT TAT GTC CAT CGT ACT TCT CCC CGT CTC GCC TAT AAT TCT CAC CAT
[all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/fb/
H A Drst350 …53 1 CGC (R) CGG (R) CGC (R) CGT (R) : CGT R 1.000 (R 1.000) CGG R 1.000 (R 1.000) CGC R 0…
374 …77 1 CGT (R) CGT (R) CGT (R) CGT (R) : CGT R 1.000 (R 1.000) CGT R 1.000 (R 1.000) CGT R 0…
400 53 CGT (R) 1.000 -> CGG (R) 1.000
440 55 CGA (R) 1.000 -> CGT (R)
550 53 CGT.CGG CGG.CGC (S N: 1.110 1.890 Sd Nd: 2.0 0.0)
552 55 CGA.CGT (S N: 1.451 1.549 Sd Nd: 1.0 0.0)
618 …P) TGT (C) TGT (C) CCC (P) : TGC TGT TGT (0.840) CGC CGT CGT (0.112) TGC TGT TGC (0.034) CGC CG…
619 …CGC (R) CGC (R) : CGC CGC CGC (0.998) CGC CGC CGT (0.001) CGC CGC CGG (0.000) CGC CGC CGA (0.0…
620 …28 1 CGC (R) CGG (R) CGC (R) CGT (R) : CGT CGG CGC (0.981) CGT CGG CGG (0.012) CGT CGG CG…
623 … CGC CGG (0.978) CGC CGC CGC (0.013) CGC CGC CGA (0.008) CGC CGC CGT (0.001) CGT CGC CGG (0.0…
[all …]
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
51 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/fb/
H A Drst350 …53 1 CGC (R) CGG (R) CGC (R) CGT (R) : CGT R 1.000 (R 1.000) CGG R 1.000 (R 1.000) CGC R 0…
374 …77 1 CGT (R) CGT (R) CGT (R) CGT (R) : CGT R 1.000 (R 1.000) CGT R 1.000 (R 1.000) CGT R 0…
400 53 CGT (R) 1.000 -> CGG (R) 1.000
440 55 CGA (R) 1.000 -> CGT (R)
550 53 CGT.CGG CGG.CGC (S N: 1.110 1.890 Sd Nd: 2.0 0.0)
552 55 CGA.CGT (S N: 1.451 1.549 Sd Nd: 1.0 0.0)
618 …P) TGT (C) TGT (C) CCC (P) : TGC TGT TGT (0.840) CGC CGT CGT (0.112) TGC TGT TGC (0.034) CGC CG…
619 …CGC (R) CGC (R) : CGC CGC CGC (0.998) CGC CGC CGT (0.001) CGC CGC CGG (0.000) CGC CGC CGA (0.0…
620 …28 1 CGC (R) CGG (R) CGC (R) CGT (R) : CGT CGG CGC (0.981) CGT CGG CGG (0.012) CGT CGG CG…
623 … CGC CGG (0.978) CGC CGC CGC (0.013) CGC CGC CGA (0.008) CGC CGC CGT (0.001) CGT CGC CGG (0.0…
[all …]
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
51 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/M1/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
52 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/bsA1/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
53 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/M1/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
52 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/bsA1/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
53 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/M2/
H A Dout5 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
6 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
7 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
8 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
18 …GG CGG AGT ATG ATT CAA CAG CAG CAG CAG CAC TGT CGC CGG CGG AGG CGC CGG CGA CGT CTG GCC GTA TAC TAC…
19 …GG CGG AGT ATG ATT CAA CAG CAA CAA CAG CAT TGT CGC CGC CGG CGA CGG CGG CGA CGT CTG GCC GTA TAC TAC…
20 …GC AGC AGA AGG CGA AGT ATG ATC CAG CAA CAA CAG CAG CAC CCC CGC CGT CGA AGG CGC CGG CGA CGT CTG GCC…
42 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
91 Leu L CTT 0 | Pro P CCT 0 | His H CAT 2 | Arg R CGT 6
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/M2/
H A Dout5 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
6 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
7 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
8 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
18 …GG CGG AGT ATG ATT CAA CAG CAG CAG CAG CAC TGT CGC CGG CGG AGG CGC CGG CGA CGT CTG GCC GTA TAC TAC…
19 …GG CGG AGT ATG ATT CAA CAG CAA CAA CAG CAT TGT CGC CGC CGG CGA CGG CGG CGA CGT CTG GCC GTA TAC TAC…
20 …GC AGC AGA AGG CGA AGT ATG ATC CAG CAA CAA CAG CAG CAC CCC CGC CGT CGA AGG CGC CGG CGA CGT CTG GCC…
42 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
91 Leu L CTT 0 | Pro P CCT 0 | His H CAT 2 | Arg R CGT 6
/dports/biology/py-ete3/ete3-3.1.2/ete3/test/ete_evol_data/S_example/paml/bsA/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
52 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/biology/py-ete3/ete3-3.1.2/examples/evol/data/S_example/paml/bsA/
H A Dout7 … CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC C…
8 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT --- CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
9 …GC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
10 … CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC TTC C…
17 …GG CAG AGA CAA AGA AGT CGC AGA CGT AGG CGG AGG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC…
18 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGT CGC CGC AGG TAC AGG CTG AGA CGT AGA AGC TGT TAC CAC…
19 …GG AGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC CGC AGG TAC AGA CTG AGA CGT AAA AGA TGT TAC CAT…
20 …AC CGC CAG AGA CAG AGA AGT CGT AGA CGA AGG AGG CGA CGC TGC CAG ACA CGG AGG AGA GCC ATG AGG TGC CGC…
29 … AGG AGG AGT ATG ATT CAA CAA CAG CAG CAG CAT CCC CGC CGC CGC CGG CGG CGG CGT CGT CTG GCC GTA TAC T…
52 Leu CTT 0 0 0 0 | Pro CCT 0 0 0 0 | His CAT 1 0 1 0 | Arg CGT 2 1 1 2
[all …]
/dports/www/chromium-legacy/chromium-88.0.4324.182/third_party/llvm/llvm/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;
/dports/devel/wasi-libcxx/llvm-project-13.0.1.src/llvm/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;
/dports/devel/llvm-cheri/llvm-project-37c49ff00e3eadce5d8703fdc4497f28458c64a8/llvm/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;
/dports/graphics/llvm-mesa/llvm-13.0.1.src/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;
/dports/devel/llvm12/llvm-project-12.0.1.src/llvm/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;
/dports/devel/llvm11/llvm-11.0.1.src/include/llvm/Analysis/
H A DSyntheticCountsUtils.h30 using CGT = GraphTraits<CallGraphType>; variable
31 using NodeRef = typename CGT::NodeRef;
32 using EdgeRef = typename CGT::EdgeRef;

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