/dports/biology/cufflinks/cufflinks-2.2.1-89-gdc3b0cb/src/ |
H A D | gff.h | 979 class CNonExon { //utility class used in subfeature promotion 986 CNonExon(GffObj* p, GffExon* e, GffLine* gl) { in CNonExon() function 992 ~CNonExon() { in ~CNonExon() 1022 CNonExon* subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name); 1023 void subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo); 1024 GffObj* promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex, 1039 bool addExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>& pex, bool noExonAttr);
|
H A D | gff.cpp | 1041 bool GffReader::addExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>& pex, bool noExon… in addExonFeature() 1070 CNonExon* GffReader::subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name) { in subfPoolCheck() 1071 CNonExon* subp=NULL; in subfPoolCheck() 1085 void GffReader::subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo) { in subfPoolAdd() 1089 pex.Add(xbuf, new CNonExon(newgfo, newgfo->exons[0], gffline)); in subfPoolAdd() 1094 GffObj* GffReader::promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex, in promoteFeature() 1114 GHash<CNonExon> pex; //keep track of any "exon"-like features that have an ID in readAll() 1230 CNonExon* subp=subfPoolCheck(gffline, pex, subp_name); in readAll()
|
/dports/biology/stringtie/stringtie-2.1.1/gclib/ |
H A D | gff.h | 1118 class CNonExon { //utility class used in subfeature promotion 1125 CNonExon(GffObj* p, GffExon* e, GffLine& gl) { in CNonExon() function 1131 ~CNonExon() { in ~CNonExon() 1191 CNonExon* subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name); 1192 void subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo); 1193 GffObj* promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex); 1208 bool readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>* pex=NULL);
|
H A D | gff.cpp | 1482 bool GffReader::readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>* pex) { in readExonFeature() 1514 CNonExon* GffReader::subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name) { in subfPoolCheck() 1515 CNonExon* subp=NULL; in subfPoolCheck() 1529 void GffReader::subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo) { in subfPoolAdd() 1533 pex.Add(xbuf, new CNonExon(newgfo, newgfo->exons[0], *gffline)); in subfPoolAdd() 1538 GffObj* GffReader::promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex) { in promoteFeature() 1660 GHash<CNonExon> pex; //keep track of any parented (i.e. exon-like) features that have an ID in readAll() 1790 CNonExon* subp=NULL; in readAll()
|
/dports/biology/libgff/libgff-2.0.0/include/ |
H A D | gff.h | 1118 class CNonExon { //utility class used in subfeature promotion 1125 CNonExon(GffObj* p, GffExon* e, GffLine& gl) { in CNonExon() function 1131 ~CNonExon() { in ~CNonExon() 1191 CNonExon* subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name); 1192 void subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo); 1193 GffObj* promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex); 1208 bool readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>* pex=NULL);
|
/dports/biology/gffread/gffread-0.12.7/gclib/ |
H A D | gff.h | 1135 class CNonExon { //utility class used in subfeature promotion 1142 CNonExon(GffObj* p, GffExon* e, GffLine& gl) { in CNonExon() function 1148 ~CNonExon() { in ~CNonExon() 1210 CNonExon* subfPoolCheck(GffLine* gffline, GHash<CNonExon*>& pex, char*& subp_name); 1211 void subfPoolAdd(GHash<CNonExon*>& pex, GffObj* newgfo); 1212 GffObj* promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon*>& pex); 1227 bool readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon*>* pex = NULL);
|
H A D | gff.cpp | 1498 bool GffReader::readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon*>* pex) { in readExonFeature() 1530 CNonExon* GffReader::subfPoolCheck(GffLine* gffline, GHash<CNonExon*>& pex, char*& subp_name) { in subfPoolCheck() 1531 CNonExon* subp=NULL; in subfPoolCheck() 1545 void GffReader::subfPoolAdd(GHash<CNonExon*>& pex, GffObj* newgfo) { in subfPoolAdd() 1549 pex.Add(xbuf, new CNonExon(newgfo, newgfo->exons[0], *gffline)); in subfPoolAdd() 1554 GffObj* GffReader::promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon*>& pex) { in promoteFeature() 1676 GHash<CNonExon*> pex; //keep track of any parented (i.e. exon-like) features that have an ID in readAll() 1806 CNonExon* subp=NULL; in readAll()
|
/dports/biology/libgff/libgff-2.0.0/src/ |
H A D | gff.cpp | 1482 bool GffReader::readExonFeature(GffObj* prevgfo, GffLine* gffline, GHash<CNonExon>* pex) { in readExonFeature() 1514 CNonExon* GffReader::subfPoolCheck(GffLine* gffline, GHash<CNonExon>& pex, char*& subp_name) { in subfPoolCheck() 1515 CNonExon* subp=NULL; in subfPoolCheck() 1529 void GffReader::subfPoolAdd(GHash<CNonExon>& pex, GffObj* newgfo) { in subfPoolAdd() 1533 pex.Add(xbuf, new CNonExon(newgfo, newgfo->exons[0], *gffline)); in subfPoolAdd() 1538 GffObj* GffReader::promoteFeature(CNonExon* subp, char*& subp_name, GHash<CNonExon>& pex) { in promoteFeature() 1660 GHash<CNonExon> pex; //keep track of any parented (i.e. exon-like) features that have an ID in readAll() 1790 CNonExon* subp=NULL; in readAll()
|