Searched refs:Chimera_T (Results 1 – 11 of 11) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | result.c | 24 Chimera_T chimera; /* NULL indicates not a chimera */ 47 Chimera_T 87 Result_new (int id, bool mergedp, Chimera_T chimera, Stage3_T *array, in Result_new() 111 Chimera_T chimera; in Result_free()
|
H A D | chimera.h | 5 typedef struct Chimera_T *Chimera_T; typedef 15 #define T Chimera_T
|
H A D | result.h | 19 extern Chimera_T 33 Result_new (int id, bool mergedp, Chimera_T chimera, Stage3_T *array,
|
H A D | stage3.h | 179 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity); 258 Sequence_T queryseq, int chimera_part, Chimera_T chimera,
|
H A D | gmap.c | 1680 stage3list_filter_and_sort (Chimera_T *chimera, List_T stage3list) { in stage3list_filter_and_sort() 1748 *chimera = (Chimera_T) NULL; in stage3list_filter_and_sort() 3400 *chimera = (Chimera_T) NULL; in check_for_chimera() 4054 apply_stage3 (bool *mergedp, Chimera_T *chimera, List_T gregions, Sequence_T queryseq, Sequence_T q… in apply_stage3() 4404 *chimera = (Chimera_T) NULL; in apply_stage3() 4431 Chimera_T chimera = NULL; in process_request() 4455 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request() 4466 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request() 4481 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request() 4485 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request() [all …]
|
H A D | output.c | 620 Chimera_T chimera, Failure_T failuretype) { in print_npaths() 664 Chimera_T chimera = NULL; in Output_filestring_fromresult()
|
H A D | pair.h | 222 bool watsonp, int sensedir, int chimera_part, Chimera_T chimera,
|
H A D | chimera.c | 58 #define T Chimera_T
|
H A D | pair.c | 5849 int querylength, Chimera_T chimera, int quality_shift, in print_sam_line() 6332 bool watsonp, int sensedir, int chimera_part, Chimera_T chimera, in Pair_print_sam()
|
H A D | stage3.c | 944 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter_chimera() 6634 Sequence_T queryseq, int chimera_part, Chimera_T chimera, in Stage3_print_sam()
|
/dports/biology/gmap/gmap-2020-09-12/ |
H A D | ChangeLog | 22911 * chimera.c, chimera.h: Made Chimera_T object created only when completely 24426 * gmap.c: Added stage 3 calls for truncating full length. Using Chimera_T 24431 * result.c, result.h: Created Chimera_T object. 24436 Created Chimera_T object.
|