Home
last modified time | relevance | path

Searched refs:Chimera_T (Results 1 – 11 of 11) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Dresult.c24 Chimera_T chimera; /* NULL indicates not a chimera */
47 Chimera_T
87 Result_new (int id, bool mergedp, Chimera_T chimera, Stage3_T *array, in Result_new()
111 Chimera_T chimera; in Result_free()
H A Dchimera.h5 typedef struct Chimera_T *Chimera_T; typedef
15 #define T Chimera_T
H A Dresult.h19 extern Chimera_T
33 Result_new (int id, bool mergedp, Chimera_T chimera, Stage3_T *array,
H A Dstage3.h179 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity);
258 Sequence_T queryseq, int chimera_part, Chimera_T chimera,
H A Dgmap.c1680 stage3list_filter_and_sort (Chimera_T *chimera, List_T stage3list) { in stage3list_filter_and_sort()
1748 *chimera = (Chimera_T) NULL; in stage3list_filter_and_sort()
3400 *chimera = (Chimera_T) NULL; in check_for_chimera()
4054 apply_stage3 (bool *mergedp, Chimera_T *chimera, List_T gregions, Sequence_T queryseq, Sequence_T q… in apply_stage3()
4404 *chimera = (Chimera_T) NULL; in apply_stage3()
4431 Chimera_T chimera = NULL; in process_request()
4455 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request()
4466 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request()
4481 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request()
4485 result = Result_new(jobid,/*mergedp*/false,(Chimera_T) NULL,(Stage3_T *) NULL, in process_request()
[all …]
H A Doutput.c620 Chimera_T chimera, Failure_T failuretype) { in print_npaths()
664 Chimera_T chimera = NULL; in Output_filestring_fromresult()
H A Dpair.h222 bool watsonp, int sensedir, int chimera_part, Chimera_T chimera,
H A Dchimera.c58 #define T Chimera_T
H A Dpair.c5849 int querylength, Chimera_T chimera, int quality_shift, in print_sam_line()
6332 bool watsonp, int sensedir, int chimera_part, Chimera_T chimera, in Pair_print_sam()
H A Dstage3.c944 Stage3_passes_filter_chimera (Chimera_T chimera, double min_trimmed_coverage, double min_identity) { in Stage3_passes_filter_chimera()
6634 Sequence_T queryseq, int chimera_part, Chimera_T chimera, in Stage3_print_sam()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog22911 * chimera.c, chimera.h: Made Chimera_T object created only when completely
24426 * gmap.c: Added stage 3 calls for truncating full length. Using Chimera_T
24431 * result.c, result.h: Created Chimera_T object.
24436 Created Chimera_T object.