| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/structure/cd_utils/ |
| H A D | cuDistmat.cpp | 82 DistanceMatrix::~DistanceMatrix() { in ~DistanceMatrix()
86 void DistanceMatrix::initialize() { in initialize()
112 double DistanceMatrix::GetMaxEntry() { in GetMaxEntry()
118 double DistanceMatrix::GetMinEntry() { in GetMinEntry()
125 void DistanceMatrix::EnforceSymmetry() { in EnforceSymmetry()
154 void DistanceMatrix::SetNTermExt(int ext) { in SetNTermExt()
158 int DistanceMatrix::GetNTermExt() { in GetNTermExt()
165 int DistanceMatrix::GetCTermExt() { in GetCTermExt()
170 string DistanceMatrix::GetMatrixName() { in GetMatrixName()
201 void DistanceMatrix::readMat(ifstream& is, DistanceMatrix& dm, bool triangular) { in readMat()
[all …]
|
| /dports/biology/lamarc/lamarc-2.1.8/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 46 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
76 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
94 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
151 template <class VertexListGraph, class DistanceMatrix,
154 DistanceMatrix& d, WeightMap w, in floyd_warshall_init_dispatch()
175 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
199 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
207 template <class VertexListGraph, class DistanceMatrix>
209 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
222 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/tree/tests/ |
| H A D | test_nj.py | 12 from skbio import DistanceMatrix, TreeNode, nj
27 self.dm1 = DistanceMatrix(data1, ids1)
47 self.dm2 = DistanceMatrix(data2, ids2)
62 self.dm3 = DistanceMatrix(data3, ids3)
76 self.dm4 = DistanceMatrix(data4, ids4)
116 dm = DistanceMatrix(data, list('abc'))
123 dm = DistanceMatrix(data, list('ab'))
133 expected = DistanceMatrix(expected_data, expected_ids)
139 dm = DistanceMatrix(data, list('abc'))
144 expected = DistanceMatrix(expected_data, list('abc'))
[all …]
|
| /dports/devel/boost-docs/boost_1_72_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| H A D | johnson_all_pairs_shortest.hpp | 36 template <class VertexAndEdgeListGraph, class DistanceMatrix,
41 DistanceMatrix& D, in johnson_all_pairs_shortest_paths()
48 BOOST_CONCEPT_ASSERT(( BasicMatrixConcept<DistanceMatrix, in johnson_all_pairs_shortest_paths()
133 template <class VertexAndEdgeListGraph, class DistanceMatrix,
137 DistanceMatrix& D, in johnson_all_pairs_shortest_paths()
150 template <class VertexAndEdgeListGraph, class DistanceMatrix,
155 DistanceMatrix& D, in johnson_dispatch()
174 template <class VertexAndEdgeListGraph, class DistanceMatrix,
179 DistanceMatrix& D, in johnson_all_pairs_shortest_paths()
189 template <class VertexAndEdgeListGraph, class DistanceMatrix>
[all …]
|
| /dports/devel/hyperscan/boost_1_75_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 51 template < typename VertexListGraph, typename DistanceMatrix,
76 template < typename VertexListGraph, typename DistanceMatrix,
147 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
162 template < class VertexAndEdgeListGraph, class DistanceMatrix,
165 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
185 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
193 template < class VertexListGraph, class DistanceMatrix >
195 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
205 DistanceMatrix& d, const bgl_named_params< P, T, R >& params) in floyd_warshall_all_pairs_shortest_paths()
212 template < class VertexAndEdgeListGraph, class DistanceMatrix >
[all …]
|
| /dports/devel/R-cran-BH/BH/inst/include/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 51 template < typename VertexListGraph, typename DistanceMatrix,
76 template < typename VertexListGraph, typename DistanceMatrix,
147 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
162 template < class VertexAndEdgeListGraph, class DistanceMatrix,
165 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
185 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
193 template < class VertexListGraph, class DistanceMatrix >
195 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
205 DistanceMatrix& d, const bgl_named_params< P, T, R >& params) in floyd_warshall_all_pairs_shortest_paths()
212 template < class VertexAndEdgeListGraph, class DistanceMatrix >
[all …]
|
| /dports/games/frogatto/frogatto-1.3.1/MacOSJet/boost/include/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 52 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
82 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
100 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
159 template <class VertexListGraph, class DistanceMatrix,
162 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
183 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
207 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
215 template <class VertexListGraph, class DistanceMatrix>
217 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
230 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/databases/percona57-pam-for-mysql/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/math/stanmath/math-4.2.0/lib/boost_1.75.0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 51 template < typename VertexListGraph, typename DistanceMatrix,
76 template < typename VertexListGraph, typename DistanceMatrix,
147 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
162 template < class VertexAndEdgeListGraph, class DistanceMatrix,
165 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
185 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
193 template < class VertexListGraph, class DistanceMatrix >
195 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
205 DistanceMatrix& d, const bgl_named_params< P, T, R >& params) in floyd_warshall_all_pairs_shortest_paths()
212 template < class VertexAndEdgeListGraph, class DistanceMatrix >
[all …]
|
| /dports/science/py-scipy/scipy-1.7.1/scipy/_lib/boost/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 51 template < typename VertexListGraph, typename DistanceMatrix,
76 template < typename VertexListGraph, typename DistanceMatrix,
147 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
162 template < class VertexAndEdgeListGraph, class DistanceMatrix,
165 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
185 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
193 template < class VertexListGraph, class DistanceMatrix >
195 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
205 DistanceMatrix& d, const bgl_named_params< P, T, R >& params) in floyd_warshall_all_pairs_shortest_paths()
212 template < class VertexAndEdgeListGraph, class DistanceMatrix >
[all …]
|
| /dports/databases/xtrabackup/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/databases/percona57-server/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/math/deal.ii/dealii-803d21ff957e349b3799cd3ef2c840bc78734305/bundled/boost-1.70.0/include/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/databases/percona57-client/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/security/keybase/client-v5.7.1/shared/ios/Pods/boost-for-react-native/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/devel/boost-libs/boost_1_72_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/devel/boost-python-libs/boost_1_72_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/databases/mysqlwsrep57-server/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/math/py-pystan/pystan-2.19.0.0/pystan/stan/lib/stan_math/lib/boost_1.69.0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare,
83 const VertexListGraph& g, DistanceMatrix& d,
101 DistanceMatrix& d, const WeightMap& w,
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/,
186 DistanceMatrix& d, WeightMap w,
212 const VertexListGraph& g, DistanceMatrix& d,
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d)
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d,
[all …]
|
| /dports/databases/mysql57-client/mysql-5.7.36/boost/boost_1_59_0/boost/graph/ |
| H A D | floyd_warshall_shortest.hpp | 53 DistanceMatrix& d, const BinaryPredicate &compare, in floyd_warshall_dispatch()
83 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
101 DistanceMatrix& d, const WeightMap& w, in floyd_warshall_all_pairs_shortest_paths()
160 template <class VertexListGraph, class DistanceMatrix,
163 DistanceMatrix& d, WeightMap /*w*/, in floyd_warshall_init_dispatch()
186 DistanceMatrix& d, WeightMap w, in floyd_warshall_noninit_dispatch()
212 const VertexListGraph& g, DistanceMatrix& d, in floyd_warshall_initialized_all_pairs_shortest_paths()
220 template <class VertexListGraph, class DistanceMatrix>
222 const VertexListGraph& g, DistanceMatrix& d) in floyd_warshall_initialized_all_pairs_shortest_paths()
235 const VertexAndEdgeListGraph& g, DistanceMatrix& d, in floyd_warshall_all_pairs_shortest_paths()
[all …]
|
| /dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/structure/cd_utils/ |
| H A D | cuSeqTreeFactory.hpp | 54 nTermExt(DistanceMatrix::NO_EXTENSION), in TreeOptions()
55 cTermExt(DistanceMatrix::NO_EXTENSION), in TreeOptions()
82 …virtual DistanceMatrix* GetMatrix(const EDistMethod method, AlignmentCollection* alignData, const …
83 …const int nTermExt = DistanceMatrix::NO_EXTENSION, const int cTermExt = DistanceMatrix::NO_EXTENSI…
87 const DistanceMatrix* GetMatrix() const {return m_matrix;} in GetMatrix()
97 DistanceMatrix* m_matrix;
|
| H A D | cuDistmat.hpp | 78 class NCBI_CDUTILS_EXPORT DistanceMatrix : public AMatrix { class
93 DistanceMatrix() : AMatrix() { in DistanceMatrix() function in DistanceMatrix
104 DistanceMatrix(const int nrows) : AMatrix(nrows, nrows) { in DistanceMatrix() function in DistanceMatrix
144 virtual ~DistanceMatrix();
145 static void readMat(ifstream& ifs, DistanceMatrix& dm, bool triangular);
146 static void writeMat(ofstream& ofs, const DistanceMatrix& dm, bool triangular);
|
| /dports/biology/ugene/ugene-40.1/src/plugins_3rdparty/phylip/src/ |
| H A D | DistanceMatrix.cpp | 271 DistanceMatrix::DistanceMatrix() in DistanceMatrix() function in U2::DistanceMatrix
278 DistanceMatrix::~DistanceMatrix() { in ~DistanceMatrix()
328 void DistanceMatrix::printPhyTree() { in printPhyTree()
329 DistanceMatrix::printPhyTree(treedata); in printPhyTree()
331 void DistanceMatrix::calculateQMatrix() { in calculateQMatrix()
360 void DistanceMatrix::dumpRawData(matrix &m) { in dumpRawData()
371 void DistanceMatrix::dumpQData() { in dumpQData()
655 void DistanceMatrix::switchNamesToAllNodes() { in switchNamesToAllNodes()
678 void DistanceMatrix::printIndex() { in printIndex()
689 void DistanceMatrix::dumpRawData() { in dumpRawData()
[all …]
|
| /dports/biology/py-scikit-bio/scikit-bio-0.5.6/skbio/stats/distance/tests/ |
| H A D | test_base.py | 21 from skbio import DistanceMatrix, Sequence
720 exp = DistanceMatrix([[0, 1, 2],
723 res = DistanceMatrix(data)
748 exp = DistanceMatrix([[0, 1, 2, 3],
767 exp = DistanceMatrix([[0, 1, 2, 3],
811 exp = DistanceMatrix([[0]])
841 exp = DistanceMatrix([
847 dm = DistanceMatrix.from_iterable(
863 exp = DistanceMatrix([
869 dm = DistanceMatrix.from_iterable(
[all …]
|