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Searched refs:ESL_MAX (Results 1 – 25 of 148) sorted by relevance

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/dports/biology/infernal/infernal-1.1.3/hmmer/src/
H A Dgeneric_viterbi.c99 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k) + esc); in p7_GViterbi()
105 sc = ESL_MAX(MMX(i-1,k) + TSC(p7P_MI,k), in p7_GViterbi()
110 DMX(i,k) = ESL_MAX(MMX(i,k-1) + TSC(p7P_MD,k-1), in p7_GViterbi()
125 DMX(i,M) = ESL_MAX(MMX(i,M-1) + TSC(p7P_MD,M-1), in p7_GViterbi()
129 sc = ESL_MAX(XMX(i,p7G_E), MMX(i,M)); in p7_GViterbi()
130 XMX(i,p7G_E) = ESL_MAX(sc, DMX(i,M)); in p7_GViterbi()
249 sc = ESL_MAX(MMX(i-1,k) + TSC(p7P_MI,k), in p7_GViterbi_longtarget()
254 DMX(i,k) = ESL_MAX(MMX(i,k-1) + TSC(p7P_MD,k-1), in p7_GViterbi_longtarget()
269 DMX(i,M) = ESL_MAX(MMX(i,M-1) + TSC(p7P_MD,M-1), in p7_GViterbi_longtarget()
273 sc = ESL_MAX(XMX(i,p7G_E), MMX(i,M)); in p7_GViterbi_longtarget()
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H A Dgeneric_optacc.c97 …MMX(i,k) = ESL_MAX(ESL_MAX(TSCDELTA(p7P_MM, k-1) * (MMX(i-1,k-1) + pp->dp[i][k*p7G_NSCELLS + … in p7_GOptimalAccuracy()
99 ESL_MAX(TSCDELTA(p7P_DM, k-1) * (DMX(i-1,k-1) + pp->dp[i][k*p7G_NSCELLS + p7G_M]), in p7_GOptimalAccuracy()
102 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), in p7_GOptimalAccuracy()
108 DMX(i,k) = ESL_MAX(TSCDELTA(p7P_MD, k-1) * MMX(i,k-1), in p7_GOptimalAccuracy()
113 …MMX(i,M) = ESL_MAX(ESL_MAX(TSCDELTA(p7P_MM, M-1) * (MMX(i-1,M-1) + pp->dp[i][M*p7G_NSCELLS + … in p7_GOptimalAccuracy()
115 ESL_MAX(TSCDELTA(p7P_DM, M-1) * (DMX(i-1,M-1) + pp->dp[i][M*p7G_NSCELLS + p7G_M]), in p7_GOptimalAccuracy()
118 DMX(i,M) = ESL_MAX(TSCDELTA(p7P_MD, M-1) * MMX(i,M-1), in p7_GOptimalAccuracy()
124 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), ESL_MAX(MMX(i,M), DMX(i, M))); in p7_GOptimalAccuracy()
129 XMX(i, p7G_J) = ESL_MAX( t1 * (XMX(i-1,p7G_J) + pp->xmx[i*p7G_NXCELLS + p7G_J]), in p7_GOptimalAccuracy()
134 XMX(i,p7G_C) = ESL_MAX( t1 * (XMX(i-1,p7G_C) + pp->xmx[i*p7G_NXCELLS + p7G_C]), in p7_GOptimalAccuracy()
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H A Dgeneric_msv.c83 MMX(i,k) = MSC(k) + ESL_MAX(MMX(i-1,k-1), XMX(i-1,p7G_B) + tbmk); in p7_GMSV()
84 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k)); in p7_GMSV()
88 XMX(i,p7G_J) = ESL_MAX( XMX(i-1,p7G_J) + tloop, XMX(i, p7G_E) + tej); in p7_GMSV()
89 XMX(i,p7G_C) = ESL_MAX( XMX(i-1,p7G_C) + tloop, XMX(i, p7G_E) + tec); in p7_GMSV()
91 XMX(i,p7G_B) = ESL_MAX( XMX(i, p7G_N) + tmove, XMX(i, p7G_J) + tmove); in p7_GMSV()
214 MMX(i,k) = MSC(k) + ESL_MAX(MMX(i-1,k-1), XMX(i-1,p7G_B) + tbmk); in p7_GMSV_longtarget()
215 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k)); in p7_GMSV_longtarget()
218 XMX(i,p7G_J) = ESL_MAX( XMX(i-1,p7G_J) /*+ tloop*/, XMX(i, p7G_E) + tej); in p7_GMSV_longtarget()
219 XMX(i,p7G_C) = ESL_MAX( XMX(i-1,p7G_C) /*+ tloop*/, XMX(i, p7G_E) + tec); in p7_GMSV_longtarget()
221 XMX(i,p7G_B) = ESL_MAX( XMX(i, p7G_N) + tmove, XMX(i, p7G_J) + tmove); in p7_GMSV_longtarget()
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H A Dp7_spensemble.c200 nov = ESL_MIN(h1->j, h2->j) - ESL_MAX(h1->i, h2->i) + 1; /* overlap */ in link_spsamples()
202 … ESL_MAX(h1->j - h1->i + 1, h2->j - h2->i + 1)); /* max length of the two hits */ in link_spsamples()
206 nov = ESL_MIN(h1->m, h2->m) - ESL_MAX(h1->k, h2->k); in link_spsamples()
208 ESL_MAX(h1->m - h1->k + 1, h2->m - h2->k + 1)); in link_spsamples()
336 imin = ESL_MIN(imin, sp->sp[h].i); imax = ESL_MAX(imax, sp->sp[h].i); in p7_spensemble_Cluster()
337 jmin = ESL_MIN(jmin, sp->sp[h].j); jmax = ESL_MAX(jmax, sp->sp[h].j); in p7_spensemble_Cluster()
338 kmin = ESL_MIN(kmin, sp->sp[h].k); kmax = ESL_MAX(kmax, sp->sp[h].k); in p7_spensemble_Cluster()
339 mmin = ESL_MIN(mmin, sp->sp[h].m); mmax = ESL_MAX(mmax, sp->sp[h].m); in p7_spensemble_Cluster()
344 cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1), in p7_spensemble_Cluster()
345 ESL_MAX(kmax-kmin+1, mmax-mmin+1)); in p7_spensemble_Cluster()
H A Dp7_tophits.c507 max = ESL_MAX(n, max); in p7_tophits_GetMaxPositionLength()
509 max = ESL_MAX(n, max); in p7_tophits_GetMaxPositionLength()
537 max = ESL_MAX(n, max); in p7_tophits_GetMaxNameLength()
556 max = ESL_MAX(n, max); in p7_tophits_GetMaxAccessionLength()
580 max = ESL_MAX(n, max); in p7_tophits_GetMaxShownLength()
585 max = ESL_MAX(n, max); in p7_tophits_GetMaxShownLength()
1246 descw = ESL_MAX(32, textw - namew - 5); in p7_tophits_Domains()
1553 int qnamew = ESL_MAX(20, strlen(qname)); in p7_tophits_TabularTargets()
1658 int qnamew = ESL_MAX(20, strlen(qname)); in p7_tophits_TabularDomains()
1660 int qaccw = (qacc ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularDomains()
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H A Dgeneric_fwdback_rescaled.c596 max = ESL_MAX( XMX(0, p7G_N), XMX(0, p7G_B)); in p7_gmx_Max()
599 for (k = 1; k <= gx->M; k++) max = ESL_MAX( max, MMX(i,k)); in p7_gmx_Max()
600 for (k = 2; k <= gx->M; k++) max = ESL_MAX( max, DMX(i,k)); in p7_gmx_Max()
602 for (k = 1; k < gx->M; k++) max = ESL_MAX( max, IMX(i,k)); in p7_gmx_Max()
605 max = ESL_MAX(max, XMX(i, p7G_E)); in p7_gmx_Max()
606 max = ESL_MAX(max, XMX(i, p7G_N)); in p7_gmx_Max()
607 max = ESL_MAX(max, XMX(i, p7G_B)); in p7_gmx_Max()
608 max = ESL_MAX(max, XMX(i, p7G_C)); in p7_gmx_Max()
/dports/biology/hmmer/hmmer-3.3/src/
H A Dgeneric_viterbi.c99 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k) + esc); in p7_GViterbi()
105 sc = ESL_MAX(MMX(i-1,k) + TSC(p7P_MI,k), in p7_GViterbi()
110 DMX(i,k) = ESL_MAX(MMX(i,k-1) + TSC(p7P_MD,k-1), in p7_GViterbi()
125 DMX(i,M) = ESL_MAX(MMX(i,M-1) + TSC(p7P_MD,M-1), in p7_GViterbi()
129 sc = ESL_MAX(XMX(i,p7G_E), MMX(i,M)); in p7_GViterbi()
130 XMX(i,p7G_E) = ESL_MAX(sc, DMX(i,M)); in p7_GViterbi()
249 sc = ESL_MAX(MMX(i-1,k) + TSC(p7P_MI,k), in p7_GViterbi_longtarget()
254 DMX(i,k) = ESL_MAX(MMX(i,k-1) + TSC(p7P_MD,k-1), in p7_GViterbi_longtarget()
269 DMX(i,M) = ESL_MAX(MMX(i,M-1) + TSC(p7P_MD,M-1), in p7_GViterbi_longtarget()
273 sc = ESL_MAX(XMX(i,p7G_E), MMX(i,M)); in p7_GViterbi_longtarget()
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H A Dgeneric_optacc.c97 …MMX(i,k) = ESL_MAX(ESL_MAX(TSCDELTA(p7P_MM, k-1) * (MMX(i-1,k-1) + pp->dp[i][k*p7G_NSCELLS + … in p7_GOptimalAccuracy()
99 ESL_MAX(TSCDELTA(p7P_DM, k-1) * (DMX(i-1,k-1) + pp->dp[i][k*p7G_NSCELLS + p7G_M]), in p7_GOptimalAccuracy()
102 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), in p7_GOptimalAccuracy()
108 DMX(i,k) = ESL_MAX(TSCDELTA(p7P_MD, k-1) * MMX(i,k-1), in p7_GOptimalAccuracy()
113 …MMX(i,M) = ESL_MAX(ESL_MAX(TSCDELTA(p7P_MM, M-1) * (MMX(i-1,M-1) + pp->dp[i][M*p7G_NSCELLS + … in p7_GOptimalAccuracy()
115 ESL_MAX(TSCDELTA(p7P_DM, M-1) * (DMX(i-1,M-1) + pp->dp[i][M*p7G_NSCELLS + p7G_M]), in p7_GOptimalAccuracy()
118 DMX(i,M) = ESL_MAX(TSCDELTA(p7P_MD, M-1) * MMX(i,M-1), in p7_GOptimalAccuracy()
124 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), ESL_MAX(MMX(i,M), DMX(i, M))); in p7_GOptimalAccuracy()
129 XMX(i, p7G_J) = ESL_MAX( t1 * (XMX(i-1,p7G_J) + pp->xmx[i*p7G_NXCELLS + p7G_J]), in p7_GOptimalAccuracy()
134 XMX(i,p7G_C) = ESL_MAX( t1 * (XMX(i-1,p7G_C) + pp->xmx[i*p7G_NXCELLS + p7G_C]), in p7_GOptimalAccuracy()
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H A Dgeneric_msv.c83 MMX(i,k) = MSC(k) + ESL_MAX(MMX(i-1,k-1), XMX(i-1,p7G_B) + tbmk); in p7_GMSV()
84 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k)); in p7_GMSV()
88 XMX(i,p7G_J) = ESL_MAX( XMX(i-1,p7G_J) + tloop, XMX(i, p7G_E) + tej); in p7_GMSV()
89 XMX(i,p7G_C) = ESL_MAX( XMX(i-1,p7G_C) + tloop, XMX(i, p7G_E) + tec); in p7_GMSV()
91 XMX(i,p7G_B) = ESL_MAX( XMX(i, p7G_N) + tmove, XMX(i, p7G_J) + tmove); in p7_GMSV()
214 MMX(i,k) = MSC(k) + ESL_MAX(MMX(i-1,k-1), XMX(i-1,p7G_B) + tbmk); in p7_GMSV_longtarget()
215 XMX(i,p7G_E) = ESL_MAX(XMX(i,p7G_E), MMX(i,k)); in p7_GMSV_longtarget()
218 XMX(i,p7G_J) = ESL_MAX( XMX(i-1,p7G_J) /*+ tloop*/, XMX(i, p7G_E) + tej); in p7_GMSV_longtarget()
219 XMX(i,p7G_C) = ESL_MAX( XMX(i-1,p7G_C) /*+ tloop*/, XMX(i, p7G_E) + tec); in p7_GMSV_longtarget()
221 XMX(i,p7G_B) = ESL_MAX( XMX(i, p7G_N) + tmove, XMX(i, p7G_J) + tmove); in p7_GMSV_longtarget()
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H A Dp7_spensemble.c200 nov = ESL_MIN(h1->j, h2->j) - ESL_MAX(h1->i, h2->i) + 1; /* overlap */ in link_spsamples()
202 … ESL_MAX(h1->j - h1->i + 1, h2->j - h2->i + 1)); /* max length of the two hits */ in link_spsamples()
206 nov = ESL_MIN(h1->m, h2->m) - ESL_MAX(h1->k, h2->k); in link_spsamples()
208 ESL_MAX(h1->m - h1->k + 1, h2->m - h2->k + 1)); in link_spsamples()
336 imin = ESL_MIN(imin, sp->sp[h].i); imax = ESL_MAX(imax, sp->sp[h].i); in p7_spensemble_Cluster()
337 jmin = ESL_MIN(jmin, sp->sp[h].j); jmax = ESL_MAX(jmax, sp->sp[h].j); in p7_spensemble_Cluster()
338 kmin = ESL_MIN(kmin, sp->sp[h].k); kmax = ESL_MAX(kmax, sp->sp[h].k); in p7_spensemble_Cluster()
339 mmin = ESL_MIN(mmin, sp->sp[h].m); mmax = ESL_MAX(mmax, sp->sp[h].m); in p7_spensemble_Cluster()
344 cwindow_width = ESL_MAX(ESL_MAX(imax-imin+1, jmax-jmin+1), in p7_spensemble_Cluster()
345 ESL_MAX(kmax-kmin+1, mmax-mmin+1)); in p7_spensemble_Cluster()
H A Dp7_tophits.c507 max = ESL_MAX(n, max); in p7_tophits_GetMaxPositionLength()
509 max = ESL_MAX(n, max); in p7_tophits_GetMaxPositionLength()
537 max = ESL_MAX(n, max); in p7_tophits_GetMaxNameLength()
556 max = ESL_MAX(n, max); in p7_tophits_GetMaxAccessionLength()
580 max = ESL_MAX(n, max); in p7_tophits_GetMaxShownLength()
585 max = ESL_MAX(n, max); in p7_tophits_GetMaxShownLength()
1246 descw = ESL_MAX(32, textw - namew - 5); in p7_tophits_Domains()
1553 int qnamew = ESL_MAX(20, strlen(qname)); in p7_tophits_TabularTargets()
1658 int qnamew = ESL_MAX(20, strlen(qname)); in p7_tophits_TabularDomains()
1660 int qaccw = (qacc ? ESL_MAX(10, strlen(qacc)) : 10); in p7_tophits_TabularDomains()
[all …]
H A Dgeneric_fwdback_rescaled.c596 max = ESL_MAX( XMX(0, p7G_N), XMX(0, p7G_B)); in p7_gmx_Max()
599 for (k = 1; k <= gx->M; k++) max = ESL_MAX( max, MMX(i,k)); in p7_gmx_Max()
600 for (k = 2; k <= gx->M; k++) max = ESL_MAX( max, DMX(i,k)); in p7_gmx_Max()
602 for (k = 1; k < gx->M; k++) max = ESL_MAX( max, IMX(i,k)); in p7_gmx_Max()
605 max = ESL_MAX(max, XMX(i, p7G_E)); in p7_gmx_Max()
606 max = ESL_MAX(max, XMX(i, p7G_N)); in p7_gmx_Max()
607 max = ESL_MAX(max, XMX(i, p7G_B)); in p7_gmx_Max()
608 max = ESL_MAX(max, XMX(i, p7G_C)); in p7_gmx_Max()
/dports/biology/infernal/infernal-1.1.3/src/
H A Dcp9_dp.c177 imx[cur][0] = ESL_MAX(sc + isc[0], -INFTY); in cp9_Viterbi()
190 mmx[cur][k] = ESL_MAX(sc + msc[k], -INFTY); in cp9_Viterbi()
199 imx[cur][k] = ESL_MAX(sc + isc[k], -INFTY); in cp9_Viterbi()
414 mmx[cur][cp9->M] = ESL_MAX(mmx[cur][cp9->M], in cp9_ViterbiBackward()
464 imx[cur][cp9->M] = ESL_MAX(imx[cur][cp9->M], in cp9_ViterbiBackward()
472 dmx[cur][cp9->M] = ESL_MAX(dmx[cur][cp9->M], in cp9_ViterbiBackward()
500 mmx[cur][k] = ESL_MAX(ESL_MAX((mmx[prv][k+1] + CP9TSC(cp9O_MM,k)), in cp9_ViterbiBackward()
507 imx[cur][k] = ESL_MAX(ESL_MAX((mmx[prv][k+1] + CP9TSC(cp9O_IM,k)), in cp9_ViterbiBackward()
520 ESL_MAX(mmx[cur][k], in cp9_ViterbiBackward()
531 dmx[cur][k] = ESL_MAX(ESL_MAX((mmx[prv][k+1] + CP9TSC(cp9O_DM,k)), in cp9_ViterbiBackward()
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H A Dhmmband.c1788 imax[v] = ESL_MAX(imax[v], ESL_MAX(r_ix[lpos] - 1, i0)); in cp9_HMM2ijBands()
2048 imax[v] = ESL_MAX(imax[v], i0); in cp9_HMM2ijBands()
2350 r_ix[k] = ESL_MAX(r_ix[k], x); in HMMBandsEnforceValidParse()
2366 r_ix[k] = ESL_MAX(r_ix[k], x); in HMMBandsEnforceValidParse()
2514 r_endx = ESL_MAX(r_endx, x); in HMMBandsEnforceValidParse()
2526 r_endx = ESL_MAX(r_endx, x); in HMMBandsEnforceValidParse()
2536 r_endx = ESL_MAX(r_endx, x); in HMMBandsEnforceValidParse()
2548 r_endx = ESL_MAX(r_endx, x); in HMMBandsEnforceValidParse()
3579 imin[v] = ESL_MAX(imin[v], i0); in cp9_HMM2ijBands_OLD()
3580 imax[v] = ESL_MAX(imax[v], i0); in cp9_HMM2ijBands_OLD()
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H A Dcm_dpsearch.c266 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in FastCYKScan()
623 envj = ESL_MAX(envj, j); in FastCYKScan()
888 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in RefCYKScan()
1281 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in FastIInsideScan()
1908 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in FastFInsideScan()
2529 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in RefIInsideScan()
2906 kmin = ESL_MAX(0, ESL_MAX(dn_y, d-dx_w)); in RefFInsideScan()
3128 dn = (cm->sttype[v] == MP_st) ? ESL_MAX(dmin[v], 2) : ESL_MAX(dmin[v], 1); in cm_CountSearchDPCalcs()
3172 dn = (cm->sttype[y] == MP_st) ? ESL_MAX(dmin[y], 2) : ESL_MAX(dmin[y], 1); in cm_CountSearchDPCalcs()
3374 dp = ESL_MAX(d-sd, 0); in FastCYKScanHB()
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H A Dlogsum.c89 const int max = ESL_MAX(-INFTY, ESL_MAX(s1, s2)); in ILogsum()
103 const int max = ESL_MAX(s1, s2); in ILogsumNI()
153 const float max = ESL_MAX(s1, s2); in LogSum2()
162 const float max = ESL_MAX(s1, s2); in FLogsum()
H A Dcm_dpsearch_trunc.c287 kmin = ESL_MAX(0, d-dx_w); in RefTrCYKScan()
305 kn = ESL_MAX(1, kmin); in RefTrCYKScan()
372 Rsc = ESL_MAX(Rsc, ESL_MAX(Jalpha[jp_y][y+yoffset][d] + tsc_v[yoffset], in RefTrCYKScan()
411 Lsc = ESL_MAX(Lsc, ESL_MAX(Jalpha[jq_y][y+yoffset][d] + tsc_v[yoffset], in RefTrCYKScan()
430 Lsc = ESL_MAX(Lsc, ESL_MAX(Jalpha[jq_y][y+yoffset][d - 1] + tsc_v[yoffset], in RefTrCYKScan()
434 Rsc = ESL_MAX(Rsc, ESL_MAX(Jalpha[jp_y][y+yoffset][d - 1] + tsc_v[yoffset], in RefTrCYKScan()
628 envj = ESL_MAX(envj, j); in RefTrCYKScan()
960 kn = ESL_MAX(1, kmin); in RefITrInsideScan()
1277 envj = ESL_MAX(envj, j); in RefITrInsideScan()
2378 envj = ESL_MAX(envj, j); in TrCYKScanHB()
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H A Dcm_p7_band.c588 kn = ESL_MAX(1, i2k[i] - pad); in p7_pins2bands()
642 in = ESL_MAX(1, k2i[k] - pad); in p7_pins2bands()
784 kn = ESL_MAX(1, kmin[0]); in cp9_ForwardP7B()
1013 kn = ESL_MAX(1, kmin[0]+1); in cp9_ForwardP7B_OLD_WITH_EL()
1502 kprvn = ESL_MAX(1, kmin[i+1]); in cp9_BackwardP7B()
1590 kprvn = ESL_MAX(1, kmin[i+1]); in cp9_BackwardP7B()
1942 kn = ESL_MAX(kmin[i], 1); in cp9_PosteriorP7B()
1962 kn = ESL_MAX(kmin[i], 1); in cp9_PosteriorP7B()
2093 kn = ESL_MAX(kmin[i], 1); in cp9_FB2HMMBandsP7B()
2133 kn = ESL_MAX(kmin[i], 1); in cp9_FB2HMMBandsP7B()
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H A Dcm_dpalign_trunc.c5902 jn = ESL_MAX(jmin[v], jmin[y]); in cm_TrOptAccAlignHB()
5930 jn = ESL_MAX(jmin[v], jmin[z]); in cm_TrOptAccAlignHB()
6859 jn = ESL_MAX(jmin[v], jmin[y]); in cm_TrCYKOutsideAlignHB()
9355 in = ESL_MAX(imin[v], 1); in cm_TrEmitterPosteriorHB()
9363 in = ESL_MAX(imin[v], 1); in cm_TrEmitterPosteriorHB()
9371 jn = ESL_MAX(jmin[v], 1); in cm_TrEmitterPosteriorHB()
9379 jn = ESL_MAX(jmin[v], 1); in cm_TrEmitterPosteriorHB()
9418 in = ESL_MAX(imin[v], 1); in cm_TrEmitterPosteriorHB()
9426 in = ESL_MAX(imin[v], 1); in cm_TrEmitterPosteriorHB()
9434 jn = ESL_MAX(jmin[v], 1); in cm_TrEmitterPosteriorHB()
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H A Dcm_dpalign.c1311 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_CYKInsideAlignHB()
1951 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_InsideAlignHB()
2666 jn = ESL_MAX(jmin[v], jmin[y]+sdr); in cm_OptAccAlignHB()
2743 d = ESL_MAX(sd+1, hdmin[v][jp_v]); in cm_OptAccAlignHB()
3283 sc = ESL_MAX(sc, (beta[v][j][0])); in cm_CYKOutsideAlign()
3499 jn = ESL_MAX(jmin[v], jmin[y]); in cm_CYKOutsideAlignHB()
3640 jn = ESL_MAX(jmin[v], jmin[y]-sdr); in cm_CYKOutsideAlignHB()
4432 jn = ESL_MAX(jmin[v], jmin[y]); in cm_OutsideAlignHB()
4573 jn = ESL_MAX(jmin[v], jmin[y]-sdr); in cm_OutsideAlignHB()
5321 in = ESL_MAX(imin[v], imin[v+1]); in cm_EmitterPosteriorHB()
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H A Dcm_tophits.c611 max = ESL_MAX(max, in cm_tophits_GetMaxPositionLength()
660 max = ESL_MAX(max, strlen(h->unsrt[i].name)); in cm_tophits_GetMaxNameLength()
681 max = ESL_MAX(max, strlen(h->unsrt[i].desc)); in cm_tophits_GetMaxDescLength()
703 max = ESL_MAX(n, max); in cm_tophits_GetMaxAccessionLength()
729 max = ESL_MAX(n, max); in cm_tophits_GetMaxShownLength()
734 max = ESL_MAX(n, max); in cm_tophits_GetMaxShownLength()
766 max = ESL_MAX(max, in cm_tophits_GetMaxClanLength()
1701 descw = ESL_MAX(32, textw - namew - 5); in cm_tophits_HitAlignments()
2234 int qnamew = ESL_MAX(20, strlen(qname)); in cm_tophits_TabularTargets1()
2339 int qnamew = ESL_MAX(20, strlen(qname)); in cm_tophits_TabularTargets2()
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/dports/biology/infernal/infernal-1.1.3/easel/
H A Desl_msafile2.c481 maxgf = ESL_MAX(maxgf, taglen); in esl_msafile2_ReadInfoPfam()
495 maxgc = ESL_MAX(maxgc, taglen); in esl_msafile2_ReadInfoPfam()
509 maxgr = ESL_MAX(maxgr, taglen); in esl_msafile2_ReadInfoPfam()
553 maxname = ESL_MAX(maxname, namelen); in esl_msafile2_ReadInfoPfam()
630 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); in esl_msafile2_ReadInfoPfam()
631 if (msa->rf != NULL) maxgc = ESL_MAX(maxgc, 2); /* 2 == strlen("RF") */ in esl_msafile2_ReadInfoPfam()
639 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); in esl_msafile2_ReadInfoPfam()
640 if (msa->name != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("ID") */ in esl_msafile2_ReadInfoPfam()
641 if (msa->desc != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("DE") */ in esl_msafile2_ReadInfoPfam()
642 if (msa->acc != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("AC") */ in esl_msafile2_ReadInfoPfam()
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H A Desl_avx.c94 { r_i8 = esl_avx_hmax_epi8(v[i]); max_i8 = ESL_MAX(max_i8, r_i8); } in main()
102 { r_u8 = esl_avx_hmax_epu8(v[i]); max_u8 = ESL_MAX(max_u8, r_u8); } in main()
110 { r_i16 = esl_avx_hmax_epi16(v[i]); max_i16 = ESL_MAX(max_i16, r_i16); } in main()
/dports/biology/hmmer/hmmer-3.3/easel/
H A Desl_msafile2.c481 maxgf = ESL_MAX(maxgf, taglen); in esl_msafile2_ReadInfoPfam()
495 maxgc = ESL_MAX(maxgc, taglen); in esl_msafile2_ReadInfoPfam()
509 maxgr = ESL_MAX(maxgr, taglen); in esl_msafile2_ReadInfoPfam()
553 maxname = ESL_MAX(maxname, namelen); in esl_msafile2_ReadInfoPfam()
630 for(i = 0; i < msa->ngc; i++) maxgc = ESL_MAX(maxgc, strlen(msa->gc_tag[i])); in esl_msafile2_ReadInfoPfam()
631 if (msa->rf != NULL) maxgc = ESL_MAX(maxgc, 2); /* 2 == strlen("RF") */ in esl_msafile2_ReadInfoPfam()
639 for(i = 0; i < msa->ngf; i++) maxgf = ESL_MAX(maxgf, strlen(msa->gf_tag[i])); in esl_msafile2_ReadInfoPfam()
640 if (msa->name != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("ID") */ in esl_msafile2_ReadInfoPfam()
641 if (msa->desc != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("DE") */ in esl_msafile2_ReadInfoPfam()
642 if (msa->acc != NULL) maxgf = ESL_MAX(maxgf, 2); /* 2 == strlen("AC") */ in esl_msafile2_ReadInfoPfam()
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H A Desl_avx.c94 { r_i8 = esl_avx_hmax_epi8(v[i]); max_i8 = ESL_MAX(max_i8, r_i8); } in main()
102 { r_u8 = esl_avx_hmax_epu8(v[i]); max_u8 = ESL_MAX(max_u8, r_u8); } in main()
110 { r_i16 = esl_avx_hmax_epi16(v[i]); max_i16 = ESL_MAX(max_i16, r_i16); } in main()

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