Searched refs:Endalign_T (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | dynprog.h | 25 typedef enum {QUERYEND_GAP, QUERYEND_INDELS, QUERYEND_NOGAPS, BEST_LOCAL} Endalign_T; typedef 212 Dynprog_endalign_string (Endalign_T endalign);
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H A D | dynprog_end.h | 31 int extraband_end, double defect_rate, Endalign_T endalign, 51 int extraband_end, double defect_rate, Endalign_T endalign,
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H A D | dynprog_end.c | 1277 int extraband_end, double defect_rate, Endalign_T endalign, in Dynprog_end5_gap() 1891 int extraband_end, double defect_rate, Endalign_T endalign, in Dynprog_end3_gap()
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H A D | dynprog.c | 105 Dynprog_endalign_string (Endalign_T endalign) { in Dynprog_endalign_string()
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H A D | stage3.c | 10293 double defect_rate, Endalign_T endalign, bool forcep) { in extend_ending5() 10520 double defect_rate, Endalign_T endalign, bool forcep) { in extend_ending3() 11546 bool extendp, Endalign_T endalign, bool forcep) { in build_path_end3() 11657 bool extendp, Endalign_T endalign, bool forcep) { in build_pairs_end5()
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