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Searched refs:Endalign_T (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddynprog.h25 typedef enum {QUERYEND_GAP, QUERYEND_INDELS, QUERYEND_NOGAPS, BEST_LOCAL} Endalign_T; typedef
212 Dynprog_endalign_string (Endalign_T endalign);
H A Ddynprog_end.h31 int extraband_end, double defect_rate, Endalign_T endalign,
51 int extraband_end, double defect_rate, Endalign_T endalign,
H A Ddynprog_end.c1277 int extraband_end, double defect_rate, Endalign_T endalign, in Dynprog_end5_gap()
1891 int extraband_end, double defect_rate, Endalign_T endalign, in Dynprog_end3_gap()
H A Ddynprog.c105 Dynprog_endalign_string (Endalign_T endalign) { in Dynprog_endalign_string()
H A Dstage3.c10293 double defect_rate, Endalign_T endalign, bool forcep) { in extend_ending5()
10520 double defect_rate, Endalign_T endalign, bool forcep) { in extend_ending3()
11546 bool extendp, Endalign_T endalign, bool forcep) { in build_path_end3()
11657 bool extendp, Endalign_T endalign, bool forcep) { in build_pairs_end5()