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Searched refs:GeneID (Results 1 – 25 of 126) sorted by relevance

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/dports/biology/py-goatools/goatools-1.1.6/goatools/test_data/
H A Dgenes_NCBI_9606_All.py180 …192 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=192, CurrentID=0, Status='live', Symbol=…
1176 …1283 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=1283, CurrentID=0, Status='live', Symbo…
1564 …1681 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=1681, CurrentID=0, Status='live', Symbo…
1913 …2097 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=2097, CurrentID=0, Status='live', Symbo…
4270 …4877 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=4877, CurrentID=0, Status='live', Symbo…
6185 …7063 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=7063, CurrentID=0, Status='live', Symbo…
15081 …23447 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23447, CurrentID=0, Status='live', Sym…
15082 …23448 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23448, CurrentID=0, Status='live', Sym…
15083 …23449 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23449, CurrentID=0, Status='live', Sym…
30683 …723788 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=723788, CurrentID=0, Status='live', S…
[all …]
H A Dgenes_NCBI_10090_All.py35 …109569 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=109569, CurrentID=0, Status='live', …
677 …11592 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=11592, CurrentID=0, Status='live', Sy…
739 …11697 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=11697, CurrentID=0, Status='live', Sy…
757 …11743 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=11743, CurrentID=0, Status='live', Sy…
1166 …12420 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=12420, CurrentID=0, Status='live', Sy…
2068 …14150 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=14150, CurrentID=0, Status='live', Sy…
3422 …17034 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=17034, CurrentID=0, Status='live', Sy…
3967 …18170 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=18170, CurrentID=0, Status='live', Sy…
5296 …20812 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=20812, CurrentID=0, Status='live', Sy…
5342 …20882 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=20882, CurrentID=0, Status='live', Sy…
[all …]
H A Dgenes_NCBI_10090_ProteinCoding.py21 …546216 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=546216, CurrentID=0, Status='live', …
84 …109625 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=109625, CurrentID=0, Status='live', …
101 …109654 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=109654, CurrentID=0, Status='live', …
152 …109747 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=109747, CurrentID=0, Status='live', …
1137 …30872 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=30872, CurrentID=0, Status='live', Sy…
8028 …30862 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=30862, CurrentID=0, Status='live', Sy…
8032 …30873 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=30873, CurrentID=0, Status='live', Sy…
10248 …30863 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=30863, CurrentID=0, Status='live', Sy…
23138 …103917 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=103917, CurrentID=0, Status='live', …
23140 …103937 : NtData(tax_id=10090, Org_name='Mus musculus', GeneID=103937, CurrentID=0, Status='live', …
[all …]
H A Dgenes_NCBI_9606_ProteinCoding.py1666 …2090 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=2090, CurrentID=0, Status='live', Symbo…
1670 …2097 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=2097, CurrentID=0, Status='live', Symbo…
3791 …4877 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=4877, CurrentID=0, Status='live', Symbo…
4029 …5183 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=5183, CurrentID=0, Status='live', Symbo…
4402 …5643 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=5643, CurrentID=0, Status='live', Symbo…
11810 …55547 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=55547, CurrentID=0, Status='live', Sym…
15744 …23447 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23447, CurrentID=0, Status='live', Sym…
15745 …23448 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23448, CurrentID=0, Status='live', Sym…
15746 …23449 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=23449, CurrentID=0, Status='live', Sym…
19465 …100529141 : NtData(tax_id=9606, Org_name='Homo sapiens', GeneID=100529141, CurrentID=0, Status='li…
[all …]
H A Dgenes_NCBI_7227_ProteinCoding.py2759 …19893529 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893529, CurrentID=0, S…
2765 …19893535 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893535, CurrentID=0, S…
2769 …19893539 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893539, CurrentID=0, S…
2770 …19893540 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893540, CurrentID=0, S…
2772 …19893542 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893542, CurrentID=0, S…
2778 …19893549 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893549, CurrentID=0, S…
2780 …19893551 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893551, CurrentID=0, S…
2785 …19893556 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893556, CurrentID=0, S…
2786 …19893558 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893558, CurrentID=0, S…
11078 …19893538 : NtData(tax_id=7227, Org_name='Drosophila melanogaster', GeneID=19893538, CurrentID=0, S…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gff3writer_test_cases/
H A Drw-1080.entry.gff311 NM_002020.5 RefSeq exon 1 113 . + . ID=id-FLT4;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:3767,M…
12 NM_002020.5 RefSeq exon 114 210 . + . ID=id-FLT4-2;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
13 NM_002020.5 RefSeq exon 211 455 . + . ID=id-FLT4-3;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
14 NM_002020.5 RefSeq exon 456 568 . + . ID=id-FLT4-4;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
15 NM_002020.5 RefSeq exon 569 731 . + . ID=id-FLT4-5;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
16 NM_002020.5 RefSeq exon 732 871 . + . ID=id-FLT4-6;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:37…
17 NM_002020.5 RefSeq exon 872 1040 . + . ID=id-FLT4-7;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:3…
18 NM_002020.5 RefSeq exon 1041 1158 . + . ID=id-FLT4-8;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:…
19 NM_002020.5 RefSeq exon 1159 1313 . + . ID=id-FLT4-9;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC:…
20 NM_002020.5 RefSeq exon 1314 1476 . + . ID=id-FLT4-10;Parent=gene-FLT4;Dbxref=GeneID:2324,HGNC:HGNC…
[all …]
H A Drw-568-1.entry.gff336 NW_004504305.1 BestRefSeq gene 13278 47676 . + . ID=gene-NDUFA6-AS1;Dbxref=GeneID:100132273,HGNC:HG…
44 NW_004504305.1 Curated Genomic exon 29695 31454 . - . ID=id-OLA1P1;Parent=gene-OLA1P1;Dbxref=GeneID…
45 NW_004504305.1 Gnomon gene 44510 45910 . - . ID=gene-LOC105373047;Dbxref=GeneID:105373047;Name=LOC1…
86 NW_004504305.1 Gnomon gene 50667 73413 . + . ID=gene-LOC102723722;Dbxref=GeneID:102723722;Name=LOC1…
297 ….1 Curated Genomic biological_region 53143 54731 . + . ID=id-GeneID:110740340;Dbxref=GeneID:110740…
298 NW_004504305.1 Curated Genomic promoter 53143 53609 . . . ID=id-GeneID:110740340-2;Dbxref=GeneID:11…
299 NW_004504305.1 Curated Genomic promoter 53196 54731 . . . ID=id-GeneID:110740340-3;Dbxref=GeneID:11…
300 …urated Genomic protein_binding_site 53215 53238 . . . ID=id-GeneID:110740340-4;Dbxref=GeneID:11074…
301 …urated Genomic protein_binding_site 53234 53275 . . . ID=id-GeneID:110740340-5;Dbxref=GeneID:11074…
302 …urated Genomic protein_binding_site 53234 53275 . . . ID=id-GeneID:110740340-6;Dbxref=GeneID:11074…
[all …]
H A Drw-568-3.entry.gff38 NT_187557.1 BestRefSeq gene 16390 36368 . + . ID=gene-LOC101929297;Dbxref=GeneID:101929297;Name=LOC…
10 …on 16390 16461 . + . ID=exon-NR_125862.1-1;Parent=rna-NR_125862.1;Dbxref=GeneID:101929297,Genbank:…
11 …on 22223 23349 . + . ID=exon-NR_125862.1-2;Parent=rna-NR_125862.1;Dbxref=GeneID:101929297,Genbank:…
12 …on 33838 33926 . + . ID=exon-NR_125862.1-3;Parent=rna-NR_125862.1;Dbxref=GeneID:101929297,Genbank:…
13 …on 34393 34445 . + . ID=exon-NR_125862.1-4;Parent=rna-NR_125862.1;Dbxref=GeneID:101929297,Genbank:…
14 …on 36162 36368 . + . ID=exon-NR_125862.1-5;Parent=rna-NR_125862.1;Dbxref=GeneID:101929297,Genbank:…
16 NT_187557.1 Curated Genomic exon 19349 19554 . - . ID=id-GNG5P1;Parent=gene-GNG5P1;Dbxref=GeneID:27…
17 NT_187557.1 Curated Genomic exon 19677 19978 . - . ID=id-GNG5P1-2;Parent=gene-GNG5P1;Dbxref=GeneID:…
18 NT_187557.1 Gnomon gene 34107 38615 . - . ID=gene-LOC107986668;Dbxref=GeneID:107986668;Name=LOC1079…
26 NT_187557.1 Gnomon gene 55293 56489 . - . ID=gene-LOC105378118;Dbxref=GeneID:105378118;Name=LOC1053…
[all …]
H A Drw-246-precursor-RNA.entry.gff37 NW_007566280.1 BestRefSeq gene 243 415 . - . ID=gene-MIR156I;Dbxref=GeneID:103318442,miRBase:MI0023…
8 …y_transcript 243 415 . - . ID=rna-NR_120723.1;Parent=gene-MIR156I;Dbxref=GeneID:103318442,Genbank:…
9 …q exon 243 415 . - . ID=exon-NR_120723.1-1;Parent=rna-NR_120723.1;Dbxref=GeneID:103318442,Genbank:…
10 NW_007566280.1 BestRefSeq miRNA 339 358 . - . ID=rna-MIR156I;Parent=rna-NR_120723.1;Dbxref=GeneID:1…
11 NW_007566280.1 BestRefSeq exon 339 358 . - . ID=exon-MIR156I-1;Parent=rna-MIR156I;Dbxref=GeneID:103…
H A Drw-170.entry.gff328 NC_002058.3 RefSeq gene 743 7372 . + . ID=gene-PVgp1;Dbxref=GeneID:919920;Name=PVgp1;gbkey=Gene;gen…
49 NC_002058.3 RefSeq sequence_conflict 1467 1468 . + . ID=id-PVgp1;Dbxref=GeneID:919920;Note=GG is G …
50 NC_002058.3 RefSeq sequence_conflict 1529 1530 . + . ID=id-PVgp1-2;Dbxref=GeneID:919920;Note=CC is …
51 NC_002058.3 RefSeq sequence_conflict 1534 1535 . + . ID=id-PVgp1-3;Dbxref=GeneID:919920;Note=CC is …
52 NC_002058.3 RefSeq sequence_conflict 1547 1547 . + . ID=id-PVgp1-4;Dbxref=GeneID:919920;Note=C is U…
53 NC_002058.3 RefSeq sequence_conflict 1579 1579 . + . ID=id-PVgp1-5;Dbxref=GeneID:919920;Note=C is A…
54 NC_002058.3 RefSeq sequence_conflict 1601 1601 . + . ID=id-PVgp1-6;Dbxref=GeneID:919920;Note=A is C…
55 NC_002058.3 RefSeq sequence_conflict 1668 1668 . + . ID=id-PVgp1-7;Dbxref=GeneID:919920;Note=C is U…
56 NC_002058.3 RefSeq sequence_conflict 2001 2001 . + . ID=id-PVgp1-8;Dbxref=GeneID:919920;Note=A is C…
58 NC_002058.3 RefSeq sequence_conflict 2035 2035 . + . ID=id-PVgp1-10;Dbxref=GeneID:919920;Note=U is …
[all …]
/dports/biology/seqan-apps/seqan-seqan-v2.4.0/apps/mason2/example/
H A Dadeno_virus_b.gff1 NC_001405 NCBI cds 559 1542 . + . ID=cds.1;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
2 NC_001405 NCBI cds 559 1542 . + . ID=cds.2;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
3 NC_001405 NCBI cds 559 1315 . + . ID=cds.3;Alias=GENE:E1a,LocusTag:HAdVCgp01,GeneID:2652980;Dbxref=…
4 NC_001405 NCBI cds 1711 2238 . + . ID=cds.4;Alias=GENE:E1b_1,LocusTag:HAdVCgp02,GeneID:2652981;Dbxr…
6 NC_001405 NCBI cds 2016 3503 . + . ID=cds.6;Alias=GENE:E1b_1,LocusTag:HAdVCgp02,GeneID:2652981;Dbxr…
7 NC_001405 NCBI cds 2016 3256 . + . ID=cds.7;Alias=GENE:E1b_1,LocusTag:HAdVCgp02,GeneID:2652981;Dbxr…
11 NC_001405 NCBI cds 7968 8417 . + . ID=cds.11;Alias=GENE:L1,LocusTag:HAdVCgp12,GeneID:2652993;Dbxref…
12 NC_001405 NCBI cds 8573 10534 . - . ID=cds.12;Alias=GENE:E2b,LocusTag:HAdVCgp06,GeneID:2652985;Dbxr…
14 NC_001405 NCBI cds 11040 12287 . + . ID=cds.14;Alias=GENE:L1,LocusTag:HAdVCgp12,GeneID:2652993;Dbxr…
20 NC_001405 NCBI cds 18838 21744 . + . ID=cds.20;Alias=GENE:L4,LocusTag:HAdVCgp10,GeneID:2652998;Dbxr…
[all …]
/dports/biology/p5-BioPerl/BioPerl-1.7.7/t/data/
H A DNC_000007-ribosomal-slippage.gb182 /db_xref="GeneID:56975"
198 /db_xref="GeneID:56975"
215 /db_xref="GeneID:56975"
317 /db_xref="GeneID:5154"
332 /db_xref="GeneID:5154"
347 /db_xref="GeneID:5154"
365 /db_xref="GeneID:5154"
398 /db_xref="GeneID:5154"
420 /db_xref="GeneID:5575"
436 /db_xref="GeneID:5575"
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/writers/unit_test/gtfwriter_test_cases/
H A Drw-172.annot.gtf2 HSSS1 . gene 14068 28534 . - . gene_id "Tmx1"; transcript_id ""; Name "Tmx1"; db_xref "GeneID:72736…
3 HSSS1 . transcript 14068 28534 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:7…
4 HSSS1 . exon 28368 28534 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
5 HSSS1 . exon 25562 25677 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
6 HSSS1 . exon 25063 25108 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
7 HSSS1 . exon 22782 22910 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
8 HSSS1 . exon 21299 21344 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
9 HSSS1 . exon 21109 21210 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
10 HSSS1 . exon 17226 17292 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
11 HSSS1 . exon 14068 15714 . - . gene_id "Tmx1"; transcript_id "gi|33859721"; db_xref "GeneID:72736";…
[all …]
H A Drw-484.entry.gtf2 NG_011340.1 RefSeq gene 1 4885 . - . gene_id "SGCE"; transcript_id ""; db_xref "GeneID:8910"; db_xr…
32 …01 18371 . + . gene_id "PEG10"; transcript_id "NM_001172438.2"; db_xref "GeneID:23089"; gbkey "mRN…
33 …001 5267 . + . gene_id "PEG10"; transcript_id "NM_001172438.2"; db_xref "GeneID:23089"; gene "PEG1…
34 …10 18371 . + . gene_id "PEG10"; transcript_id "NM_001172438.2"; db_xref "GeneID:23089"; gene "PEG1…
35 …0"; transcript_id "NM_001172438.2"; db_xref "CCDS:CCDS75636.1"; db_xref "GeneID:23089"; gbkey "CDS…
39 …01 18371 . + . gene_id "PEG10"; transcript_id "NM_001040152.1"; db_xref "GeneID:23089"; gbkey "mRN…
40 …001 5256 . + . gene_id "PEG10"; transcript_id "NM_001040152.1"; db_xref "GeneID:23089"; gene "PEG1…
41 …10 18371 . + . gene_id "PEG10"; transcript_id "NM_001040152.1"; db_xref "GeneID:23089"; gene "PEG1…
45 … 5001 18371 . + . gene_id "PEG10"; transcript_id "NM_015068.3"; db_xref "GeneID:23089"; gbkey "mRN…
46 …n 5001 5256 . + . gene_id "PEG10"; transcript_id "NM_015068.3"; db_xref "GeneID:23089"; gene "PEG1…
[all …]
H A Drw-1298.entry.gtf2 NT_167833.1 Gnomon gene 1925 7352 . - . gene_id "LOC100695893"; transcript_id ""; db_xref "GeneID:1…
25 …ne 40002 136219 . + . gene_id "LOC100695450"; transcript_id ""; db_xref "GeneID:100695450"; gbkey …
273 …e 139038 150317 . - . gene_id "LOC106097285"; transcript_id ""; db_xref "GeneID:106097285"; gbkey …
283 …3 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
284 …0 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
285 …8 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
286 …7 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
287 …3 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
288 …5 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
289 …9 . - 0 gene_id "LOC106097285"; transcript_id "XM_013267228.1"; db_xref "GeneID:106097285"; gbkey …
[all …]
H A Drw-860.entry.gtf2 …ene 16381 16383 . + . gene_id "LOC101929297"; transcript_id ""; db_xref "GeneID:101929297"; descri…
3 …6383 . + . gene_id "LOC101929297"; transcript_id "NR_125862.1"; db_xref "GeneID:101929297"; gbkey …
4 …6383 . + . gene_id "LOC101929297"; transcript_id "NR_125862.1"; db_xref "GeneID:101929297"; gene "…
5 …omic gene 19349 19978 . - . gene_id "GNG5P1"; transcript_id ""; db_xref "GeneID:2789"; db_xref "HG…
6 NT_187557.1 Gnomon gene 55293 56489 . - . gene_id "LOC105378118"; transcript_id ""; db_xref "GeneID…
7 …6489 . - . gene_id "LOC105378118"; transcript_id "XR_951704.2"; db_xref "GeneID:105378118"; gbkey …
8 …6489 . - . gene_id "LOC105378118"; transcript_id "XR_951704.2"; db_xref "GeneID:105378118"; gene "…
9 …5740 . - . gene_id "LOC105378118"; transcript_id "XR_951704.2"; db_xref "GeneID:105378118"; gene "…
10 …5361 . - . gene_id "LOC105378118"; transcript_id "XR_951704.2"; db_xref "GeneID:105378118"; gene "…
11 …e 116381 116383 . + . gene_id "LOC107986668"; transcript_id ""; db_xref "GeneID:107986668"; gbkey …
[all …]
H A Drw-836-1.entry.gtf2 NC_016163.1 RefSeq gene 2 262389 . + . gene_id "phiR1-37_gp367"; transcript_id ""; db_xref "GeneID:…
7 NC_016163.1 RefSeq gene 103 375 . + . gene_id "phiR1-37_gp001"; transcript_id ""; db_xref "GeneID:1…
11 NC_016163.1 RefSeq gene 326 577 . + . gene_id "phiR1-37_gp002"; transcript_id ""; db_xref "GeneID:1…
15 NC_016163.1 RefSeq gene 564 812 . + . gene_id "phiR1-37_gp003"; transcript_id ""; db_xref "GeneID:1…
19 NC_016163.1 RefSeq gene 784 1002 . + . gene_id "phiR1-37_gp004"; transcript_id ""; db_xref "GeneID:…
23 NC_016163.1 RefSeq gene 999 1187 . + . gene_id "phiR1-37_gp005"; transcript_id ""; db_xref "GeneID:…
27 NC_016163.1 RefSeq gene 1181 1534 . + . gene_id "phiR1-37_gp006"; transcript_id ""; db_xref "GeneID…
31 NC_016163.1 RefSeq gene 1531 1749 . + . gene_id "phiR1-37_gp007"; transcript_id ""; db_xref "GeneID…
35 NC_016163.1 RefSeq gene 1736 1924 . + . gene_id "phiR1-37_gp008"; transcript_id ""; db_xref "GeneID…
39 NC_016163.1 RefSeq gene 1918 2166 . + . gene_id "phiR1-37_gp009"; transcript_id ""; db_xref "GeneID…
[all …]
/dports/biology/gffread/gffread-0.12.7/examples/
H A Dannotation.gff1 NT_187562.1 BestRefSeq gene 411 68627 . + . ID=gene55473;Dbxref=GeneID:8972,HGNC:HGNC:7043,MIM:1543…
63 NT_187562.1 Curated Genomic gene 214038 219958 . - . ID=gene55476;Dbxref=GeneID:136541,HGNC:HGNC:39…
71 NT_187562.1 Curated Genomic CDS 219568 219607 . - 0 ID=cds110498;Parent=rna157473;Dbxref=GeneID:136…
72 NT_187562.1 Curated Genomic CDS 217435 217573 . - 2 ID=cds110498;Parent=rna157473;Dbxref=GeneID:136…
76 NT_187562.1 BestRefSeq gene 962573 963937 . + . ID=gene55581;Dbxref=GeneID:135927,HGNC:HGNC:21750;N…
77 NT_187562.1 BestRefSeq mRNA 962573 963937 . + . ID=rna157497;Parent=gene55581;Dbxref=GeneID:135927,…
78 NT_187562.1 BestRefSeq exon 962573 962821 . + . ID=id1809397;Parent=rna157497;Dbxref=GeneID:135927,…
79 NT_187562.1 BestRefSeq exon 963419 963937 . + . ID=id1809398;Parent=rna157497;Dbxref=GeneID:135927,…
80 NT_187562.1 BestRefSeq CDS 962614 962821 . + 0 ID=cds110593;Parent=rna157497;Dbxref=GeneID:135927,G…
81 NT_187562.1 BestRefSeq CDS 963419 963654 . + 2 ID=cds110593;Parent=rna157497;Dbxref=GeneID:135927,G…
[all …]
/dports/biology/ugene/ugene-40.1/data/samples/Genbank/
H A DNC_014267.1.gb43 /db_xref="GeneID:9385051"
52 /db_xref="GeneID:9385051"
64 /db_xref="GeneID:9384876"
73 /db_xref="GeneID:9384876"
78 /db_xref="GeneID:9384877"
87 /db_xref="GeneID:9384877"
92 /db_xref="GeneID:9384878"
101 /db_xref="GeneID:9384878"
106 /db_xref="GeneID:9384879"
115 /db_xref="GeneID:9384879"
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases/
H A Drw-228.gff39 NW_006763130.1 BestRefSeq gene 8626 22896 . - . ID=gene0;Dbxref=GeneID:16640,MGI:MGI:1321153;Name=K…
71 NW_006763130.1 Gnomon gene 110254 133163 . - . ID=gene3;Dbxref=GeneID:100862408;Name=LOC100862408;g…
72 NW_006763130.1 Gnomon exon 110254 110389 . - . ID=id3726;Parent=gene3;Dbxref=GeneID:100862408;gbkey…
144 NW_006763130.1 Gnomon gene 434775 472645 . - . ID=gene7;Dbxref=GeneID:105242439,MGI:MGI:5621591;Nam…
145 NW_006763130.1 Gnomon exon 434775 436104 . - . ID=id12241;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
146 NW_006763130.1 Gnomon exon 471698 472030 . - . ID=id13688;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
147 NW_006763130.1 Gnomon exon 472211 472253 . - . ID=id13714;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
148 NW_006763130.1 Gnomon exon 472538 472645 . - . ID=id13734;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
153 NW_006763130.1 Curated Genomic gene 526096 528227 . + . ID=gene8;Dbxref=GeneID:667793,MGI:MGI:36486…
154 NW_006763130.1 Curated Genomic exon 526096 528227 . + . ID=id15548;Parent=gene8;Dbxref=GeneID:66779…
[all …]
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/unit_test/gff3reader_test_cases_genbank/
H A Drw-228.gff39 NW_006763130.1 BestRefSeq gene 8626 22896 . - . ID=gene0;Dbxref=GeneID:16640,MGI:MGI:1321153;Name=K…
71 NW_006763130.1 Gnomon gene 110254 133163 . - . ID=gene3;Dbxref=GeneID:100862408;Name=LOC100862408;g…
72 NW_006763130.1 Gnomon exon 110254 110389 . - . ID=id3726;Parent=gene3;Dbxref=GeneID:100862408;gbkey…
144 NW_006763130.1 Gnomon gene 434775 472645 . - . ID=gene7;Dbxref=GeneID:105242439,MGI:MGI:5621591;Nam…
145 NW_006763130.1 Gnomon exon 434775 436104 . - . ID=id12241;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
146 NW_006763130.1 Gnomon exon 471698 472030 . - . ID=id13688;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
147 NW_006763130.1 Gnomon exon 472211 472253 . - . ID=id13714;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
148 NW_006763130.1 Gnomon exon 472538 472645 . - . ID=id13734;Parent=gene7;Dbxref=GeneID:105242439,MGI:…
153 NW_006763130.1 Curated Genomic gene 526096 528227 . + . ID=gene8;Dbxref=GeneID:667793,MGI:MGI:36486…
154 NW_006763130.1 Curated Genomic exon 526096 528227 . + . ID=id15548;Parent=gene8;Dbxref=GeneID:66779…
[all …]
H A Drw-228.asn147 db "GeneID",
267 db "GeneID",
374 db "GeneID",
537 db "GeneID",
649 db "GeneID",
775 db "GeneID",
825 db "GeneID",
928 db "GeneID",
1049 db "GeneID",
1179 db "GeneID",
[all …]
/dports/biology/py-biopython/biopython-1.79/Tests/GenBank/
H A DNC_000932.gb42 /db_xref="GeneID:1466250"
52 /db_xref="GeneID:1466250"
59 /db_xref="GeneID:1466273"
64 /db_xref="GeneID:1466273"
68 /db_xref="GeneID:844802"
77 /db_xref="GeneID:844802"
88 /db_xref="GeneID:1466272"
97 /db_xref="GeneID:844797"
106 /db_xref="GeneID:844797"
119 /db_xref="GeneID:844798"
[all …]
H A DNC_005816.gb58 /db_xref="GeneID:2767718"
72 /db_xref="GeneID:2767718"
100 /db_xref="GeneID:2767716"
124 /db_xref="GeneID:2767716"
159 /db_xref="GeneID:2767717"
176 /db_xref="GeneID:2767717"
187 /db_xref="GeneID:2767720"
198 /db_xref="GeneID:2767720"
209 /db_xref="GeneID:2767712"
224 /db_xref="GeneID:2767712"
[all …]
/dports/biology/p5-BioPerl-Run/BioPerl-Run-1.007003/t/data/
H A Dxprt.gb41 /db_xref="GeneID:7391352"
50 /db_xref="GeneID:7391352"
59 /db_xref="GeneID:7391353"
64 /db_xref="GeneID:7391353"
68 /db_xref="GeneID:7392114"
78 /db_xref="GeneID:7392114"
86 /db_xref="GeneID:7392109"
95 /db_xref="GeneID:7392109"

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