1LOCUS NC_012004 2095 bp DNA linear BCT 07-MAY-2009 2DEFINITION Streptococcus uberis 0140J, complete genome. 3ACCESSION NC_012004 REGION: 843183..845277 4VERSION NC_012004.1 GI:222152201 5DBLINK Project:353 6KEYWORDS complete genome. 7SOURCE Streptococcus uberis 0140J 8 ORGANISM Streptococcus uberis 0140J 9 Bacteria; Firmicutes; Lactobacillales; Streptococcaceae; 10 Streptococcus. 11REFERENCE 1 12 AUTHORS Ward,P.N., Holden,M.T.G., Leigh,J.A., Lennard,N., Bignell,A., 13 Barron,A., Clark,L., Quail,M.A., Woodward,J., Barrell,B.G., 14 Egan,S.A., Field,T.R., Maskell,D., Kehoe,M., Dowson,C.G., 15 Chanter,N., Whatmore,A.M., Bentley,S.D. and Parkhill,J. 16 TITLE Evidence for niche adaptation in the genome of the bovine pathogen 17 Streptococcus uberis 18 JOURNAL BMC Genet. 10 (54) (2009) In press 19REFERENCE 2 (bases 1 to 2095) 20 CONSRTM NCBI Genome Project 21 TITLE Direct Submission 22 JOURNAL Submitted (29-JAN-2009) National Center for Biotechnology 23 Information, NIH, Bethesda, MD 20894, USA 24REFERENCE 3 (bases 1 to 2095) 25 AUTHORS Holden,M.T.G. 26 TITLE Direct Submission 27 JOURNAL Submitted (10-MAR-2008) Holden M.T.G., Pathogen Genomics, Sanger 28 Institute Wellcome Trust, Wellcome Trust Genome Campus, Hinxton, 29 Cambridge, CB10 1SA, UNITED KINGDOM 30COMMENT PROVISIONAL REFSEQ: This record has not yet been subject to final 31 NCBI review. The reference sequence was derived from AM946015. 32 COMPLETENESS: full length. 33FEATURES Location/Qualifiers 34 source 1..2095 35 /organism="Streptococcus uberis 0140J" 36 /mol_type="genomic DNA" 37 /strain="0140J" 38 /db_xref="taxon:218495" 39 gene <1..958 40 /locus_tag="SUB0865" 41 /db_xref="GeneID:7391352" 42 CDS <1..958 43 /locus_tag="SUB0865" 44 /EC_number="1.7.1.7" 45 /codon_start=1 46 /transl_table=11 47 /product="GMP reductase" 48 /protein_id="YP_002562194.1" 49 /db_xref="GI:222153017" 50 /db_xref="GeneID:7391352" 51 /translation="MFNDMPVFDYEDIQLIPNKCIINSRSEADTSVQLGKYSFKLPVI 52 PANMQTIIDETIAEQLAKDGYFYIMHRFDEESRKPFIKRMHEQNLIASISVGVKEYEY 53 DFVTSLKEDAPEFVTIDIAHGHANSVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN 54 AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA 55 KSIRFGATMVMIGSLFAGHLESPGKLVEIDGETFKEYYGSASEYQKGEHKNVEGKKIL 56 LPTKGHLSDTLTEMKQDLQSSISYAGGNDLAALRRVDYVIVKNSIWNGDSI" 57 gene 1001..1095 58 /locus_tag="SUBs03" 59 /db_xref="GeneID:7391353" 60 misc_RNA 1001..1095 61 /locus_tag="SUBs03" 62 /note="Purine riboswitch (RF00167) as predicted by Rfam, 63 score 59.77" 64 /db_xref="GeneID:7391353" 65 gene 1180..1761 66 /gene="xpt" 67 /locus_tag="SUB0866" 68 /db_xref="GeneID:7392114" 69 CDS 1180..1761 70 /gene="xpt" 71 /locus_tag="SUB0866" 72 /EC_number="2.4.2.-" 73 /codon_start=1 74 /transl_table=11 75 /product="xanthine phosphoribosyltransferase" 76 /protein_id="YP_002562195.1" 77 /db_xref="GI:222153018" 78 /db_xref="GeneID:7392114" 79 /translation="MKLLEERIIKDGNVLGENILKVDSFLTHQVDYHLMRDIGKVFAE 80 SYADAGITKVVTIEASGIAPAVYVAEALKVPMIFAKKHKNITMTEGILTAEVYSFTKQ 81 VTSTVSIASKFLSKDDKVLIIDDFLANGQAAKGLIEIIQQAGASVEGVGIVIEKSFQD 82 GRQLLENMGVKVTSLARIKNFENGRLNFMEADA" 83 gene 1761..>2095 84 /gene="pbuX" 85 /locus_tag="SUB0867" 86 /db_xref="GeneID:7392109" 87 CDS 1761..>2095 88 /gene="pbuX" 89 /locus_tag="SUB0867" 90 /codon_start=1 91 /transl_table=11 92 /product="xanthine permease" 93 /protein_id="YP_002562196.1" 94 /db_xref="GI:222153019" 95 /db_xref="GeneID:7392109" 96 /translation="MQTETQHSHSQSAILGLQHLLSMYAGSILVPIMIAGALGYSAKE 97 LTYLISTDIFMCGLATFLQLQFNKYFGVGLPVVLGCAFQSVAPLSIIGAKQGSGAMFG 98 ALIASGLFVILIAGVFSKIARFFPAIVTGSVITTIGLSLIPVAMGNMGNNTPKPTGQS 99 LILAFLTIFIILAIQKFATGFIKSIAILIGLIAGTLVAALMGLVDTSAVSSAPWVHVP 100 TPFYFGAPKFEITSIVMMCIIAIVSMVESTGVYLALSDITDETLDSNRLRNGYRAEGL 101 AVLLGGIFNTFPYTGFSQNVGLVRLSGIKTRRPIYYTAAFLVVIGLLPKFGALAQMIP 102 SPVLGGAMLVLFGMVALQGMQMLNRVDFQGNEHNFIIAAVSISAGVGFNGTNLFASLP 103 STANMFLTNGIVIATVTAVLLNLIFNGNTKEN" 104ORIGIN 105 1 ttatgaagat attcaattaa ttcctaataa gtgtatcatt aatagtcgtt ctgaggctga 106 61 tacaagcgtt caacttggaa aatacagttt taaattacca gtcataccag ctaatatgca 107 121 aacgatcatt gacgaaacga ttgctgaaca attagctaaa gatggttatt tttatatcat 108 181 gcatcgattc gatgaagaaa gccgtaagcc atttattaag cgcatgcatg agcaaaactt 109 241 gattgcttcc atttcagttg gtgtaaagga atatgaatac gattttgtca cttctttaaa 110 301 agaagatgcc cctgaatttg tgacaattga tatcgcccat ggacacgcca atagtgttat 111 361 caagatgatt cagcacatca aaaaagaatt accagagaca tttgttatcg ctggcaatgt 112 421 tgggacacct gaagcagtac gtgaattgga aaatgcagga gcagatgcaa caaaagttgg 113 481 catcggacct ggtaaagtat gtatcacaaa agttaaaact ggttttggaa caggtggctg 114 541 gcaattagct gctttacgtt ggtgtgccaa agctgcgcgt aaaccaataa tagcggatgg 115 601 tggtattcgc actcatggag atattgccaa gtctatccga tttggtgcaa ctatggtcat 116 661 gattggttcg ctttttgcag gacatcttga aagtcctggt aaactcgttg aaatcgatgg 117 721 tgaaaccttt aaagaatact atggttcagc atctgagtat caaaagggag aacacaaaaa 118 781 tgttgaaggt aaaaaaatct tattaccaac aaaaggtcat ctttcggata ccttaacaga 119 841 aatgaaacaa gatttgcaat cctcaatttc atatgcggga ggaaatgatt tagctgctct 120 901 tcgtcgcgtc gattacgtta ttgtcaaaaa ttccatctgg aatggtgatt ctatctaaga 121 961 aggtcttgaa ttttcagaaa ttcgtgatat gatagtcata acaaaaattg aataaactac 122 1021 ttatttatac tgtgaattgg cgcagtgttt ctacaagaca ccgtaatgtc taacaataag 123 1081 taagctaaaa agcttgcttg gttttaacct tgcaaagcag gaggagtagt gtcctcttgt 124 1141 tttgtggcaa gctttttttg tttttagaaa gaggtcatca tgaaattact tgaagaacgt 125 1201 attataaaag atggtaacgt tctaggcgaa aacattttaa aggttgatag ttttctaaca 126 1261 caccaagtgg attatcactt gatgcgtgac attggtaaag tttttgctga atcatatgcg 127 1321 gatgctggta tcacgaaggt tgtgacaatc gaagcatctg gtattgctcc agccgtttat 128 1381 gtcgcggaag ctttaaaagt ccctatgatc tttgcaaaga aacataaaaa tatcaccatg 129 1441 accgaaggta ttttaaccgc ggaggtatac tcatttacta aacaggtaac cagcacggtt 130 1501 tctattgcaa gtaaattttt gagtaaagat gataaagtct taattattga tgacttttta 131 1561 gctaatggtc aagccgcaaa aggcctaatt gaaattattc aacaagcggg tgccagtgtt 132 1621 gaaggtgttg gcattgtgat tgaaaagtca tttcaagatg gtcgtcaatt acttgaaaat 133 1681 atgggagtta aggttacttc tctagcacgt atcaaaaatt ttgaaaatgg aagattaaac 134 1741 tttatggagg ccgacgcata atgcaaacgg aaacacaaca ttcacattca caatcagcga 135 1801 ttttaggatt acaacattta ttatcaatgt atgctggttc tattctagtt cccatcatga 136 1861 ttgctggagc tttaggttac tctgctaaag aattgactta tttgatttca acagatattt 137 1921 tcatgtgtgg ccttgcaact tttttacaat tgcaatttaa taagtacttt ggagtgggac 138 1981 tacctgtcgt tcttggttgt gcttttcaat cagtggcacc tctatcaatt attggggcta 139 2041 aacaaggttc tggtgctatg tttggtgcct tgattgcctc aggtcttttt gtcat 140// 141 142