1LOCUS       NC_012004               2095 bp    DNA     linear   BCT 07-MAY-2009
2DEFINITION  Streptococcus uberis 0140J, complete genome.
3ACCESSION   NC_012004 REGION: 843183..845277
4VERSION     NC_012004.1  GI:222152201
5DBLINK      Project:353
6KEYWORDS    complete genome.
7SOURCE      Streptococcus uberis 0140J
8  ORGANISM  Streptococcus uberis 0140J
9            Bacteria; Firmicutes; Lactobacillales; Streptococcaceae;
10            Streptococcus.
11REFERENCE   1
12  AUTHORS   Ward,P.N., Holden,M.T.G., Leigh,J.A., Lennard,N., Bignell,A.,
13            Barron,A., Clark,L., Quail,M.A., Woodward,J., Barrell,B.G.,
14            Egan,S.A., Field,T.R., Maskell,D., Kehoe,M., Dowson,C.G.,
15            Chanter,N., Whatmore,A.M., Bentley,S.D. and Parkhill,J.
16  TITLE     Evidence for niche adaptation in the genome of the bovine pathogen
17            Streptococcus uberis
18  JOURNAL   BMC Genet. 10 (54) (2009) In press
19REFERENCE   2  (bases 1 to 2095)
20  CONSRTM   NCBI Genome Project
21  TITLE     Direct Submission
22  JOURNAL   Submitted (29-JAN-2009) National Center for Biotechnology
23            Information, NIH, Bethesda, MD 20894, USA
24REFERENCE   3  (bases 1 to 2095)
25  AUTHORS   Holden,M.T.G.
26  TITLE     Direct Submission
27  JOURNAL   Submitted (10-MAR-2008) Holden M.T.G., Pathogen Genomics, Sanger
28            Institute Wellcome Trust, Wellcome Trust Genome Campus, Hinxton,
29            Cambridge, CB10 1SA, UNITED KINGDOM
30COMMENT     PROVISIONAL REFSEQ: This record has not yet been subject to final
31            NCBI review. The reference sequence was derived from AM946015.
32            COMPLETENESS: full length.
33FEATURES             Location/Qualifiers
34     source          1..2095
35                     /organism="Streptococcus uberis 0140J"
36                     /mol_type="genomic DNA"
37                     /strain="0140J"
38                     /db_xref="taxon:218495"
39     gene            <1..958
40                     /locus_tag="SUB0865"
41                     /db_xref="GeneID:7391352"
42     CDS             <1..958
43                     /locus_tag="SUB0865"
44                     /EC_number="1.7.1.7"
45                     /codon_start=1
46                     /transl_table=11
47                     /product="GMP reductase"
48                     /protein_id="YP_002562194.1"
49                     /db_xref="GI:222153017"
50                     /db_xref="GeneID:7391352"
51                     /translation="MFNDMPVFDYEDIQLIPNKCIINSRSEADTSVQLGKYSFKLPVI
52                     PANMQTIIDETIAEQLAKDGYFYIMHRFDEESRKPFIKRMHEQNLIASISVGVKEYEY
53                     DFVTSLKEDAPEFVTIDIAHGHANSVIKMIQHIKKELPETFVIAGNVGTPEAVRELEN
54                     AGADATKVGIGPGKVCITKVKTGFGTGGWQLAALRWCAKAARKPIIADGGIRTHGDIA
55                     KSIRFGATMVMIGSLFAGHLESPGKLVEIDGETFKEYYGSASEYQKGEHKNVEGKKIL
56                     LPTKGHLSDTLTEMKQDLQSSISYAGGNDLAALRRVDYVIVKNSIWNGDSI"
57     gene            1001..1095
58                     /locus_tag="SUBs03"
59                     /db_xref="GeneID:7391353"
60     misc_RNA        1001..1095
61                     /locus_tag="SUBs03"
62                     /note="Purine riboswitch (RF00167) as predicted by Rfam,
63                     score 59.77"
64                     /db_xref="GeneID:7391353"
65     gene            1180..1761
66                     /gene="xpt"
67                     /locus_tag="SUB0866"
68                     /db_xref="GeneID:7392114"
69     CDS             1180..1761
70                     /gene="xpt"
71                     /locus_tag="SUB0866"
72                     /EC_number="2.4.2.-"
73                     /codon_start=1
74                     /transl_table=11
75                     /product="xanthine phosphoribosyltransferase"
76                     /protein_id="YP_002562195.1"
77                     /db_xref="GI:222153018"
78                     /db_xref="GeneID:7392114"
79                     /translation="MKLLEERIIKDGNVLGENILKVDSFLTHQVDYHLMRDIGKVFAE
80                     SYADAGITKVVTIEASGIAPAVYVAEALKVPMIFAKKHKNITMTEGILTAEVYSFTKQ
81                     VTSTVSIASKFLSKDDKVLIIDDFLANGQAAKGLIEIIQQAGASVEGVGIVIEKSFQD
82                     GRQLLENMGVKVTSLARIKNFENGRLNFMEADA"
83     gene            1761..>2095
84                     /gene="pbuX"
85                     /locus_tag="SUB0867"
86                     /db_xref="GeneID:7392109"
87     CDS             1761..>2095
88                     /gene="pbuX"
89                     /locus_tag="SUB0867"
90                     /codon_start=1
91                     /transl_table=11
92                     /product="xanthine permease"
93                     /protein_id="YP_002562196.1"
94                     /db_xref="GI:222153019"
95                     /db_xref="GeneID:7392109"
96                     /translation="MQTETQHSHSQSAILGLQHLLSMYAGSILVPIMIAGALGYSAKE
97                     LTYLISTDIFMCGLATFLQLQFNKYFGVGLPVVLGCAFQSVAPLSIIGAKQGSGAMFG
98                     ALIASGLFVILIAGVFSKIARFFPAIVTGSVITTIGLSLIPVAMGNMGNNTPKPTGQS
99                     LILAFLTIFIILAIQKFATGFIKSIAILIGLIAGTLVAALMGLVDTSAVSSAPWVHVP
100                     TPFYFGAPKFEITSIVMMCIIAIVSMVESTGVYLALSDITDETLDSNRLRNGYRAEGL
101                     AVLLGGIFNTFPYTGFSQNVGLVRLSGIKTRRPIYYTAAFLVVIGLLPKFGALAQMIP
102                     SPVLGGAMLVLFGMVALQGMQMLNRVDFQGNEHNFIIAAVSISAGVGFNGTNLFASLP
103                     STANMFLTNGIVIATVTAVLLNLIFNGNTKEN"
104ORIGIN
105        1 ttatgaagat attcaattaa ttcctaataa gtgtatcatt aatagtcgtt ctgaggctga
106       61 tacaagcgtt caacttggaa aatacagttt taaattacca gtcataccag ctaatatgca
107      121 aacgatcatt gacgaaacga ttgctgaaca attagctaaa gatggttatt tttatatcat
108      181 gcatcgattc gatgaagaaa gccgtaagcc atttattaag cgcatgcatg agcaaaactt
109      241 gattgcttcc atttcagttg gtgtaaagga atatgaatac gattttgtca cttctttaaa
110      301 agaagatgcc cctgaatttg tgacaattga tatcgcccat ggacacgcca atagtgttat
111      361 caagatgatt cagcacatca aaaaagaatt accagagaca tttgttatcg ctggcaatgt
112      421 tgggacacct gaagcagtac gtgaattgga aaatgcagga gcagatgcaa caaaagttgg
113      481 catcggacct ggtaaagtat gtatcacaaa agttaaaact ggttttggaa caggtggctg
114      541 gcaattagct gctttacgtt ggtgtgccaa agctgcgcgt aaaccaataa tagcggatgg
115      601 tggtattcgc actcatggag atattgccaa gtctatccga tttggtgcaa ctatggtcat
116      661 gattggttcg ctttttgcag gacatcttga aagtcctggt aaactcgttg aaatcgatgg
117      721 tgaaaccttt aaagaatact atggttcagc atctgagtat caaaagggag aacacaaaaa
118      781 tgttgaaggt aaaaaaatct tattaccaac aaaaggtcat ctttcggata ccttaacaga
119      841 aatgaaacaa gatttgcaat cctcaatttc atatgcggga ggaaatgatt tagctgctct
120      901 tcgtcgcgtc gattacgtta ttgtcaaaaa ttccatctgg aatggtgatt ctatctaaga
121      961 aggtcttgaa ttttcagaaa ttcgtgatat gatagtcata acaaaaattg aataaactac
122     1021 ttatttatac tgtgaattgg cgcagtgttt ctacaagaca ccgtaatgtc taacaataag
123     1081 taagctaaaa agcttgcttg gttttaacct tgcaaagcag gaggagtagt gtcctcttgt
124     1141 tttgtggcaa gctttttttg tttttagaaa gaggtcatca tgaaattact tgaagaacgt
125     1201 attataaaag atggtaacgt tctaggcgaa aacattttaa aggttgatag ttttctaaca
126     1261 caccaagtgg attatcactt gatgcgtgac attggtaaag tttttgctga atcatatgcg
127     1321 gatgctggta tcacgaaggt tgtgacaatc gaagcatctg gtattgctcc agccgtttat
128     1381 gtcgcggaag ctttaaaagt ccctatgatc tttgcaaaga aacataaaaa tatcaccatg
129     1441 accgaaggta ttttaaccgc ggaggtatac tcatttacta aacaggtaac cagcacggtt
130     1501 tctattgcaa gtaaattttt gagtaaagat gataaagtct taattattga tgacttttta
131     1561 gctaatggtc aagccgcaaa aggcctaatt gaaattattc aacaagcggg tgccagtgtt
132     1621 gaaggtgttg gcattgtgat tgaaaagtca tttcaagatg gtcgtcaatt acttgaaaat
133     1681 atgggagtta aggttacttc tctagcacgt atcaaaaatt ttgaaaatgg aagattaaac
134     1741 tttatggagg ccgacgcata atgcaaacgg aaacacaaca ttcacattca caatcagcga
135     1801 ttttaggatt acaacattta ttatcaatgt atgctggttc tattctagtt cccatcatga
136     1861 ttgctggagc tttaggttac tctgctaaag aattgactta tttgatttca acagatattt
137     1921 tcatgtgtgg ccttgcaact tttttacaat tgcaatttaa taagtacttt ggagtgggac
138     1981 tacctgtcgt tcttggttgt gcttttcaat cagtggcacc tctatcaatt attggggcta
139     2041 aacaaggttc tggtgctatg tttggtgcct tgattgcctc aggtcttttt gtcat
140//
141
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