/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/ |
H A D | handle_range.cpp | 69 if ( it->first.IntersectingWith(filter) ) { in CHandleRange() 234 m_TotalRanges_plus.IntersectingWith(hr.m_TotalRanges_plus) || in IntersectingWithTotalRange() 235 m_TotalRanges_minus.IntersectingWith(hr.m_TotalRanges_minus); in IntersectingWithTotalRange() 243 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWithSubranges() 254 bool CHandleRange::IntersectingWith(const CHandleRange& hr) const in IntersectingWith() function in CHandleRange 262 if ( !GetOverlappingRange().IntersectingWith(hr.GetOverlappingRange()) ) { in IntersectingWith_NoStrand() 267 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWith_NoStrand() 282 (it->first.IntersectingWith(range) || in MergeRange() 430 bool CHandleRange::IntersectingWith(const TRange& range, in IntersectingWith() function in CHandleRange 435 if ( range.IntersectingWith(it->first) && in IntersectingWith()
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H A D | handle_range_map.cpp | 317 if ( it2 != end() && it1->second.IntersectingWith(it2->second) ) { in IntersectingWithMap() 333 .IntersectingWith(it2->second.GetOverlappingRange()) ) { in TotalRangeIntersectingWith()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/ |
H A D | handle_range.cpp | 69 if ( it->first.IntersectingWith(filter) ) { in CHandleRange() 234 m_TotalRanges_plus.IntersectingWith(hr.m_TotalRanges_plus) || in IntersectingWithTotalRange() 235 m_TotalRanges_minus.IntersectingWith(hr.m_TotalRanges_minus); in IntersectingWithTotalRange() 243 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWithSubranges() 254 bool CHandleRange::IntersectingWith(const CHandleRange& hr) const in IntersectingWith() function in CHandleRange 262 if ( !GetOverlappingRange().IntersectingWith(hr.GetOverlappingRange()) ) { in IntersectingWith_NoStrand() 267 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWith_NoStrand() 282 (it->first.IntersectingWith(range) || in MergeRange() 430 bool CHandleRange::IntersectingWith(const TRange& range, in IntersectingWith() function in CHandleRange 435 if ( range.IntersectingWith(it->first) && in IntersectingWith()
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H A D | handle_range_map.cpp | 317 if ( it2 != end() && it1->second.IntersectingWith(it2->second) ) { in IntersectingWithMap() 333 .IntersectingWith(it2->second.GetOverlappingRange()) ) { in TotalRangeIntersectingWith()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/test/ |
H A D | test_range_coll.cpp | 196 BOOST_CHECK(coll.IntersectingWith(TSeqRange(42, 48)) == false); in BOOST_AUTO_TEST_CASE() 197 BOOST_CHECK(coll.IntersectingWith(TSeqRange(52, 58)) == true); in BOOST_AUTO_TEST_CASE() 198 BOOST_CHECK(coll.IntersectingWith(TSeqRange(58, 65)) == true); in BOOST_AUTO_TEST_CASE() 199 BOOST_CHECK(coll.IntersectingWith(TSeqRange(75, 80)) == true); in BOOST_AUTO_TEST_CASE() 200 BOOST_CHECK(coll.IntersectingWith(TSeqRange(85, 90)) == false); in BOOST_AUTO_TEST_CASE()
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H A D | test_range_set.cpp | 196 BOOST_CHECK(coll.IntersectingWith(TSeqRange(42, 48)) == false); in BOOST_AUTO_TEST_CASE() 197 BOOST_CHECK(coll.IntersectingWith(TSeqRange(52, 58)) == true); in BOOST_AUTO_TEST_CASE() 198 BOOST_CHECK(coll.IntersectingWith(TSeqRange(58, 65)) == true); in BOOST_AUTO_TEST_CASE() 199 BOOST_CHECK(coll.IntersectingWith(TSeqRange(75, 80)) == true); in BOOST_AUTO_TEST_CASE() 200 BOOST_CHECK(coll.IntersectingWith(TSeqRange(85, 90)) == false); in BOOST_AUTO_TEST_CASE()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/mergetree/ |
H A D | equiv_range.hpp | 76 bool IntersectingWith(const CEquivRange& Other) const { in IntersectingWith() function in CEquivRange 77 return (Query.IntersectingWith(Other.Query) || in IntersectingWith() 78 Subjt.IntersectingWith(Other.Subjt)); in IntersectingWith()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/ |
H A D | handle_range.hpp | 107 bool IntersectingWith(const CHandleRange& hr) const; 119 bool IntersectingWith(const TRange& range,
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/ |
H A D | handle_range.hpp | 107 bool IntersectingWith(const CHandleRange& hr) const; 119 bool IntersectingWith(const TRange& range,
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | select_alignments_alt.cpp | 62 if(a.Strand() != b.Strand() || !a.IntersectingWith(b)) return commonspl; in CountCommonSplices() 82 …if(!a.ReadingFrame().IntersectingWith(b.ReadingFrame()) || a.GetCdsInfo().PStops() != b.GetCdsInfo… in AreSimilar() 154 if(a.Strand() != b.Strand() || !a.IntersectingWith(b)) return false; in HaveCommonExonOrIntron()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/ |
H A D | vectorscreen.cpp | 275 if(prev_range.IntersectingWith(cur_range)){ in x_MergeLowerRankSeqalign() 304 IntersectingWith(*iter_higher)){ in x_MergeLowerRankSeqalign() 355 } else if (cur_range.IntersectingWith(next_range)){ in x_MergeInclusiveSeqalign() 584 if(prev_range->IntersectingWith(cur_aln_info->range) || in x_BuildNonOverlappingRange() 609 if((*iter_higher)->range.IntersectingWith((*iter_lower)->range)){ in x_BuildNonOverlappingRange()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/ |
H A D | vectorscreen.cpp | 275 if(prev_range.IntersectingWith(cur_range)){ in x_MergeLowerRankSeqalign() 304 IntersectingWith(*iter_higher)){ in x_MergeLowerRankSeqalign() 355 } else if (cur_range.IntersectingWith(next_range)){ in x_MergeInclusiveSeqalign() 584 if(prev_range->IntersectingWith(cur_aln_info->range) || in x_BuildNonOverlappingRange() 609 if((*iter_higher)->range.IntersectingWith((*iter_lower)->range)){ in x_BuildNonOverlappingRange()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/mergetree/ |
H A D | equiv_range.cpp | 195 if(IntersectingWith(Check)) in END_SCOPE() 271 IQ = Query.IntersectingWith(Check.Query); in CalcRelativeDuo() 272 IS = Subjt.IntersectingWith(Check.Subjt); in CalcRelativeDuo() 503 } else if(Range.IntersectingWith(Equiv.Query)) { in SplitIntersections() 558 } else if(Range.IntersectingWith(Equiv.Subjt)) { in SplitIntersections()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/ |
H A D | getfeature.cpp | 95 if(seq_range.IntersectingWith(feat_info->range)){ in GetFeatInfo()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/ |
H A D | seqinfosrc_seqdb.cpp | 127 target[it].IntersectingWith(*itr)) { in GetMasks()
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H A D | seqinfosrc_seqvec.cpp | 119 loc.IntersectingWith(target_ranges[ir])) { in s_SeqIntervalToSeqLocInfo()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/ |
H A D | seqinfosrc_seqdb.cpp | 127 target[it].IntersectingWith(*itr)) { in GetMasks()
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H A D | seqinfosrc_seqvec.cpp | 119 loc.IntersectingWith(target_ranges[ir])) { in s_SeqIntervalToSeqLocInfo()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/ |
H A D | getfeature.cpp | 95 if(seq_range.IntersectingWith(feat_info->range)){ in GetFeatInfo()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
H A D | align_compare.cpp | 504 first_it->first.IntersectingWith(second_it->first) && in SComparison() 505 first_it->second.IntersectingWith(second_it->second); in SComparison() 1195 overlap = lhs->query_range.IntersectingWith(rhs->query_range); in s_IsOverlapping() 1199 overlap = lhs->subject_range.IntersectingWith(rhs->subject_range); in s_IsOverlapping() 1203 if ( false == lhs->subject_range.IntersectingWith(rhs->subject_range) && in s_IsOverlapping() 1204 false == lhs->query_range.IntersectingWith(rhs->query_range) ) in s_IsOverlapping()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 121 …bool IntersectingWith(TSignedSeqPos a, TSignedSeqPos b) const // insertion/mismatch at least pa… in IntersectingWith() function in CInDelInfo 302 _ASSERT( !Start().IntersectingWith(ReadingFrame()) ); in Invariant() 303 _ASSERT( !Stop().IntersectingWith(ReadingFrame()) ); in Invariant() 449 bool IntersectingWith(const CGeneModel& a) const in IntersectingWith() function in CGeneModel 451 return Limits().IntersectingWith(a.Limits()); in IntersectingWith()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/ |
H A D | inversion_merge_aligner.cpp | 173 if(DomSubjRange.IntersectingWith(NonSubjRange)) { in x_RunMerger() 339 if(DomRange.IntersectingWith(NonRange)) { in x_CreateDiscAlignment()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/ |
H A D | bam_compare.cpp | 417 aln.ref_range.IntersectingWith(q.refseq_range) ) { in Run() 501 aln.ref_range.IntersectingWith(q.refseq_range) ) { in Run() 854 !a.ref_range.IntersectingWith(q.refseq_range) ) { in Run()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/ |
H A D | Spliced_exon.cpp | 211 if (row == 1 && within_product_ranges.IntersectingWith( in GetRowSeq_insertions()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/ |
H A D | Spliced_exon.cpp | 211 if (row == 1 && within_product_ranges.IntersectingWith( in GetRowSeq_insertions()
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