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Searched refs:IntersectingWith (Results 1 – 25 of 75) sorted by relevance

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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objmgr/
H A Dhandle_range.cpp69 if ( it->first.IntersectingWith(filter) ) { in CHandleRange()
234 m_TotalRanges_plus.IntersectingWith(hr.m_TotalRanges_plus) || in IntersectingWithTotalRange()
235 m_TotalRanges_minus.IntersectingWith(hr.m_TotalRanges_minus); in IntersectingWithTotalRange()
243 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWithSubranges()
254 bool CHandleRange::IntersectingWith(const CHandleRange& hr) const in IntersectingWith() function in CHandleRange
262 if ( !GetOverlappingRange().IntersectingWith(hr.GetOverlappingRange()) ) { in IntersectingWith_NoStrand()
267 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWith_NoStrand()
282 (it->first.IntersectingWith(range) || in MergeRange()
430 bool CHandleRange::IntersectingWith(const TRange& range, in IntersectingWith() function in CHandleRange
435 if ( range.IntersectingWith(it->first) && in IntersectingWith()
H A Dhandle_range_map.cpp317 if ( it2 != end() && it1->second.IntersectingWith(it2->second) ) { in IntersectingWithMap()
333 .IntersectingWith(it2->second.GetOverlappingRange()) ) { in TotalRangeIntersectingWith()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objmgr/
H A Dhandle_range.cpp69 if ( it->first.IntersectingWith(filter) ) { in CHandleRange()
234 m_TotalRanges_plus.IntersectingWith(hr.m_TotalRanges_plus) || in IntersectingWithTotalRange()
235 m_TotalRanges_minus.IntersectingWith(hr.m_TotalRanges_minus); in IntersectingWithTotalRange()
243 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWithSubranges()
254 bool CHandleRange::IntersectingWith(const CHandleRange& hr) const in IntersectingWith() function in CHandleRange
262 if ( !GetOverlappingRange().IntersectingWith(hr.GetOverlappingRange()) ) { in IntersectingWith_NoStrand()
267 if ( it1->first.IntersectingWith(it2->first) ) { in IntersectingWith_NoStrand()
282 (it->first.IntersectingWith(range) || in MergeRange()
430 bool CHandleRange::IntersectingWith(const TRange& range, in IntersectingWith() function in CHandleRange
435 if ( range.IntersectingWith(it->first) && in IntersectingWith()
H A Dhandle_range_map.cpp317 if ( it2 != end() && it1->second.IntersectingWith(it2->second) ) { in IntersectingWithMap()
333 .IntersectingWith(it2->second.GetOverlappingRange()) ) { in TotalRangeIntersectingWith()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/util/test/
H A Dtest_range_coll.cpp196 BOOST_CHECK(coll.IntersectingWith(TSeqRange(42, 48)) == false); in BOOST_AUTO_TEST_CASE()
197 BOOST_CHECK(coll.IntersectingWith(TSeqRange(52, 58)) == true); in BOOST_AUTO_TEST_CASE()
198 BOOST_CHECK(coll.IntersectingWith(TSeqRange(58, 65)) == true); in BOOST_AUTO_TEST_CASE()
199 BOOST_CHECK(coll.IntersectingWith(TSeqRange(75, 80)) == true); in BOOST_AUTO_TEST_CASE()
200 BOOST_CHECK(coll.IntersectingWith(TSeqRange(85, 90)) == false); in BOOST_AUTO_TEST_CASE()
H A Dtest_range_set.cpp196 BOOST_CHECK(coll.IntersectingWith(TSeqRange(42, 48)) == false); in BOOST_AUTO_TEST_CASE()
197 BOOST_CHECK(coll.IntersectingWith(TSeqRange(52, 58)) == true); in BOOST_AUTO_TEST_CASE()
198 BOOST_CHECK(coll.IntersectingWith(TSeqRange(58, 65)) == true); in BOOST_AUTO_TEST_CASE()
199 BOOST_CHECK(coll.IntersectingWith(TSeqRange(75, 80)) == true); in BOOST_AUTO_TEST_CASE()
200 BOOST_CHECK(coll.IntersectingWith(TSeqRange(85, 90)) == false); in BOOST_AUTO_TEST_CASE()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/align/mergetree/
H A Dequiv_range.hpp76 bool IntersectingWith(const CEquivRange& Other) const { in IntersectingWith() function in CEquivRange
77 return (Query.IntersectingWith(Other.Query) || in IntersectingWith()
78 Subjt.IntersectingWith(Other.Subjt)); in IntersectingWith()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/objmgr/impl/
H A Dhandle_range.hpp107 bool IntersectingWith(const CHandleRange& hr) const;
119 bool IntersectingWith(const TRange& range,
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/include/objmgr/impl/
H A Dhandle_range.hpp107 bool IntersectingWith(const CHandleRange& hr) const;
119 bool IntersectingWith(const TRange& range,
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/
H A Dselect_alignments_alt.cpp62 if(a.Strand() != b.Strand() || !a.IntersectingWith(b)) return commonspl; in CountCommonSplices()
82 …if(!a.ReadingFrame().IntersectingWith(b.ReadingFrame()) || a.GetCdsInfo().PStops() != b.GetCdsInfo… in AreSimilar()
154 if(a.Strand() != b.Strand() || !a.IntersectingWith(b)) return false; in HaveCommonExonOrIntron()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/align_format/
H A Dvectorscreen.cpp275 if(prev_range.IntersectingWith(cur_range)){ in x_MergeLowerRankSeqalign()
304 IntersectingWith(*iter_higher)){ in x_MergeLowerRankSeqalign()
355 } else if (cur_range.IntersectingWith(next_range)){ in x_MergeInclusiveSeqalign()
584 if(prev_range->IntersectingWith(cur_aln_info->range) || in x_BuildNonOverlappingRange()
609 if((*iter_higher)->range.IntersectingWith((*iter_lower)->range)){ in x_BuildNonOverlappingRange()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/align_format/
H A Dvectorscreen.cpp275 if(prev_range.IntersectingWith(cur_range)){ in x_MergeLowerRankSeqalign()
304 IntersectingWith(*iter_higher)){ in x_MergeLowerRankSeqalign()
355 } else if (cur_range.IntersectingWith(next_range)){ in x_MergeInclusiveSeqalign()
584 if(prev_range->IntersectingWith(cur_aln_info->range) || in x_BuildNonOverlappingRange()
609 if((*iter_higher)->range.IntersectingWith((*iter_lower)->range)){ in x_BuildNonOverlappingRange()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/mergetree/
H A Dequiv_range.cpp195 if(IntersectingWith(Check)) in END_SCOPE()
271 IQ = Query.IntersectingWith(Check.Query); in CalcRelativeDuo()
272 IS = Subjt.IntersectingWith(Check.Subjt); in CalcRelativeDuo()
503 } else if(Range.IntersectingWith(Equiv.Query)) { in SplitIntersections()
558 } else if(Range.IntersectingWith(Equiv.Subjt)) { in SplitIntersections()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/readers/
H A Dgetfeature.cpp95 if(seq_range.IntersectingWith(feat_info->range)){ in GetFeatInfo()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/blast/api/
H A Dseqinfosrc_seqdb.cpp127 target[it].IntersectingWith(*itr)) { in GetMasks()
H A Dseqinfosrc_seqvec.cpp119 loc.IntersectingWith(target_ranges[ir])) { in s_SeqIntervalToSeqLocInfo()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/algo/blast/api/
H A Dseqinfosrc_seqdb.cpp127 target[it].IntersectingWith(*itr)) { in GetMasks()
H A Dseqinfosrc_seqvec.cpp119 loc.IntersectingWith(target_ranges[ir])) { in s_SeqIntervalToSeqLocInfo()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/readers/
H A Dgetfeature.cpp95 if(seq_range.IntersectingWith(feat_info->range)){ in GetFeatInfo()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/
H A Dalign_compare.cpp504 first_it->first.IntersectingWith(second_it->first) && in SComparison()
505 first_it->second.IntersectingWith(second_it->second); in SComparison()
1195 overlap = lhs->query_range.IntersectingWith(rhs->query_range); in s_IsOverlapping()
1199 overlap = lhs->subject_range.IntersectingWith(rhs->subject_range); in s_IsOverlapping()
1203 if ( false == lhs->subject_range.IntersectingWith(rhs->subject_range) && in s_IsOverlapping()
1204 false == lhs->query_range.IntersectingWith(rhs->query_range) ) in s_IsOverlapping()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/
H A Dgnomon_model.hpp121 …bool IntersectingWith(TSignedSeqPos a, TSignedSeqPos b) const // insertion/mismatch at least pa… in IntersectingWith() function in CInDelInfo
302 _ASSERT( !Start().IntersectingWith(ReadingFrame()) ); in Invariant()
303 _ASSERT( !Stop().IntersectingWith(ReadingFrame()) ); in Invariant()
449 bool IntersectingWith(const CGeneModel& a) const in IntersectingWith() function in CGeneModel
451 return Limits().IntersectingWith(a.Limits()); in IntersectingWith()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/ngalign/
H A Dinversion_merge_aligner.cpp173 if(DomSubjRange.IntersectingWith(NonSubjRange)) { in x_RunMerger()
339 if(DomRange.IntersectingWith(NonRange)) { in x_CreateDiscAlignment()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/sra/readers/bam/test/
H A Dbam_compare.cpp417 aln.ref_range.IntersectingWith(q.refseq_range) ) { in Run()
501 aln.ref_range.IntersectingWith(q.refseq_range) ) { in Run()
854 !a.ref_range.IntersectingWith(q.refseq_range) ) { in Run()
/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/
H A DSpliced_exon.cpp211 if (row == 1 && within_product_ranges.IntersectingWith( in GetRowSeq_insertions()
/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/
H A DSpliced_exon.cpp211 if (row == 1 && within_product_ranges.IntersectingWith( in GetRowSeq_insertions()

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