/dports/devel/upp/upp/uppsrc/Core/SSH/ |
H A D | Hosts.h | 14 …bool IsMismatch() const { return status == LIBSSH2_KNOWNHOST_CHECK_MISMATC… in IsMismatch() function
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objtools/alnmgr/ |
H A D | alntext.cpp | 340 if (chunk.IsDiag() || chunk.IsMatch() || chunk.IsMismatch()) { in CProteinAlignText() 346 } else if (chunk.IsMismatch()) { in CProteinAlignText() 352 if (chunk.IsMismatch()) { in CProteinAlignText()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objtools/alnmgr/ |
H A D | alntext.cpp | 340 if (chunk.IsDiag() || chunk.IsMatch() || chunk.IsMismatch()) { in CProteinAlignText() 346 } else if (chunk.IsMismatch()) { in CProteinAlignText() 352 if (chunk.IsMismatch()) { in CProteinAlignText()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/include/algo/gnomon/ |
H A D | gnomon_model.hpp | 117 …int InDelEnd() const { return ((IsInsertion() || IsMismatch()) ? Loc()+Len() : Loc()); } // first… in InDelEnd() 120 bool IsMismatch() const { return m_type == eMism; } in IsMismatch() function in CInDelInfo 124 ((IsInsertion() || IsMismatch()) && Loc() <= b && a <= Loc()+Len()-1); in IntersectingWith() 156 if((IsDeletion() || IsMismatch()) && GetInDelV().empty()) in Init() 635 if(fsi_begin->Loc() == orig_a && !fsi_begin->IsMismatch()) { in CAlignMap()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/gnomon/ |
H A D | gnomon_seq.cpp | 424 … for( ;fsi != fsi_end && fsi->Loc() == orig_a && !fsi->IsMismatch(); ++fsi ) { // first left end in InsertIndelRangesForInterval() 435 for( ; fsi != fsi_end && fsi->IsMismatch() && fsi->Loc() == orig_a+(int)mism.size(); ++fsi) in InsertIndelRangesForInterval() 446 for( ;fsi != fsi_end && fsi->Loc() == bb && !fsi->IsMismatch(); ++fsi ) { // right end in InsertIndelRangesForInterval() 472 for( ; fsi != fsi_end && fsi->IsMismatch() && fsi->Loc() == orig_a+(int)mism.size(); ++fsi) in InsertIndelRangesForInterval() 516 if(!f->IsMismatch()) in CAlignMap()
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H A D | gnomon_objmgr.cpp | 234 …if(!mismstatus.empty() && (chunk.IsProduct_ins() || chunk.IsGenomic_ins() || chunk.IsMismatch())) { in CAlignModel() 266 } else if (chunk.IsMismatch()) { in CAlignModel() 341 } else if(!indl->IsMismatch() && !indl_next->IsMismatch()) { // tandem indels in CAlignModel()
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H A D | gnomon_model.cpp | 66 if(!i->IsMismatch()) in GetInDels() 72 if(i->IsMismatch() || i->Len()%3 == 0) // skip mismatches and full codons in GetInDels() 78 …ifts().end() && (++e)->Limits().NotEmpty() && next->Loc() == e->GetFrom() && !next->IsMismatch()) { in GetInDels() 890 _ASSERT(indl->IsMismatch()); in RemoveExtraFShifts() 903 _ASSERT(indels.back().IsMismatch()); in RemoveExtraFShifts()
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H A D | annot.cpp | 683 if(((i->IsInsertion() || i->IsMismatch()) && Include(fullcds,i->Loc())) || in Predict()
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H A D | variations.cpp | 235 if(indl->IsMismatch()) { in AddAlignment()
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H A D | asn1.cpp | 821 if(indel.IsMismatch()) { in AlignModelToSeqalign()
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H A D | aligncollapser.cpp | 954 if(indl->IsMismatch() || !indl->IntersectingWith(a, b)) in TotalFrameShift() 2255 if(i->IsMismatch()) { in AddAlignment()
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H A D | chainer.cpp | 7625 if(i->IsMismatch()) { in MapModelsToOrigContig() 7943 if(indl->IsMismatch()) { in SetGenomic()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/sequence/ |
H A D | project_exons.cpp | 796 : chunk.IsMismatch() ? chunk.GetMismatch() in ProjectExon_oldlogic() 801 bool is_diag = chunk.IsMatch() || chunk.IsMismatch() || chunk.IsDiag(); in ProjectExon_oldlogic() 954 : chunk.IsMismatch() ? chunk.GetMismatch() in SBlocks() 961 || chunk.IsMismatch() in SBlocks() 1745 : chunk.IsMismatch() ? chunk.GetMismatch() 1751 bool current_is_diag = chunk.IsMatch() || chunk.IsDiag() || chunk.IsMismatch();
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/dports/devel/upp/upp/uppsrc/Core/SSH/src.tpp/ |
H A D | Upp_Ssh_Hosts_en-us.tpp | 130 [s5;:Upp`:`:SshHosts`:`:Info`:`:IsMismatch`(`)const: [@(0.0.255) bool]_[* IsMismatch]()_[@(0.0.255)…
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/prosplign/ |
H A D | Info.cpp | 676 if (chunk.IsDiag() || chunk.IsMatch() || chunk.IsMismatch()) { in CAliChunk() 682 } else if (chunk.IsMismatch()) { in CAliChunk() 783 if (chunk.IsDiag() || chunk.IsMatch() || chunk.IsMismatch()) { in TestExonLength() 789 } else if (chunk.IsMismatch()) { in TestExonLength() 839 } else if (new_chunk->IsMismatch()) { in SplitChunk()
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H A D | prosplign.cpp | 1255 } else if (chunk.IsMismatch()) { in HasStartOnNuc()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seqalign/ |
H A D | Spliced_seg.cpp | 336 } else if (part.IsMismatch()) { in s_ExonToDenseg()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/align/util/ |
H A D | best_placement.cpp | 373 } else if(chunk->IsMismatch()) { in s_GetIdentOdds_nucSS()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seqalign/ |
H A D | Spliced_seg.cpp | 336 } else if (part.IsMismatch()) { in s_ExonToDenseg()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/algo/seqqa/ |
H A D | single_aln_tests.cpp | 806 } else if (part.IsMismatch()) { in s_ExonToDenseg()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/misc/hgvs/ |
H A D | objcoords.cpp | 352 } else if (part.IsMismatch()) { in x_CheckExonGap()
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/dports/biology/ncbi-cxx-toolkit/ncbi_cxx--25_2_0/src/objects/seq/ |
H A D | seq_loc_mapper_base.cpp | 2006 if ( part.IsMatch() || part.IsMismatch() || part.IsDiag() ) { in x_IterateExonParts()
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/dports/biology/ncbi-blast+/ncbi-blast-2.12.0+-src/c++/src/objects/seq/ |
H A D | seq_loc_mapper_base.cpp | 2006 if ( part.IsMatch() || part.IsMismatch() || part.IsDiag() ) { in x_IterateExonParts()
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