Searched refs:LOCANT_EL (Results 1 – 11 of 11) sorted by relevance
/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/test/java/uk/ac/cam/ch/wwmm/opsin/ |
H A D | ComponentGeneration_AmbiguitiesAndIrregularitiesTest.java | 80 Element locant = new TokenEl(LOCANT_EL, "1,2,3,4"); in testLocantsIndicatingTokenizationIsCorrect() 100 Element locant = new TokenEl(LOCANT_EL, "1"); in testLocantsIndicatingTokenizationIsIncorrect() 168 Element locant = new TokenEl(LOCANT_EL, "2"); in testTetraphenShouldBeTetraphen2() 185 Element locant = new TokenEl(LOCANT_EL, "2"); in testTetraphenShouldBeTetraphen3()
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H A D | ComponentGeneration_ProcesslocantsTest.java | 17 locant = new TokenEl(LOCANT_EL); in setUpSubstituent() 266 Element numericLocant = new TokenEl(LOCANT_EL); in testCarbohydrateStyleLocants() 286 assertEquals(LOCANT_EL, elBeforeMultiplier.getName()); in testCarbohydrateStyleLocantsNoNumericComponent() 300 Element numericLocant = new TokenEl(LOCANT_EL); in testCarbohydrateStyleLocantsCounterExample() 307 assertEquals(unmodifiedLocant.getName(), LOCANT_EL); in testCarbohydrateStyleLocantsCounterExample() local
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H A D | ComponentGeneration_StereochemistryTest.java | 281 Element locant = new TokenEl(LOCANT_EL, "3"); in testLocantedCisTrans() 287 locant = new TokenEl(LOCANT_EL, "5"); in testLocantedCisTrans() 314 Element locant = new TokenEl(LOCANT_EL, "3"); in testLocantedExoOn() 344 Element locant = new TokenEl(LOCANT_EL, "3"); in testLocantedExo() 467 Element locant = new TokenEl(LOCANT_EL, "2"); in testEandZUnbrackettedLocanted() 472 locant = new TokenEl(LOCANT_EL, "4"); in testEandZUnbrackettedLocanted() 498 Element locant = new TokenEl(LOCANT_EL, "2"); in testEandZUnbrackettedBeforeEne() 503 locant = new TokenEl(LOCANT_EL, "4"); in testEandZUnbrackettedBeforeEne() 531 assertEquals(LOCANT_EL, newLocant.getName()); in testEandZUnbrackettedBeforeEne() 541 Element locant = new TokenEl(LOCANT_EL, "2"); in testEandZUnbrackettedBeforeYlidene() [all …]
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H A D | ComponentProcessorTest.java | 100 Element locant = new TokenEl(LOCANT_EL); in testSubtractiveWithMultiplierAndLocants()
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/dports/science/opsin/dan2097-opsin-9b25f7546b67/opsin-core/src/main/java/uk/ac/cam/ch/wwmm/opsin/ |
H A D | ComponentGenerator.java | 164 !isThisALocant.getName().equals(LOCANT_EL) || in resolveAmbiguities() 244 if (elName.equals(LOCANT_EL)) { in processLocants() 386 Element newLocant = new TokenEl(LOCANT_EL, sb.toString()); in ifCarbohydrateLocantConvertToAminoAcidStyleLocant() 435 ompLocant.setName(LOCANT_EL); in convertOrthoMetaParaToLocants() 566 Element locant = new TokenEl(LOCANT_EL, "N"); in processAlkaneStemModifications() 734 if (possibleLocant !=null && possibleLocant.getName().equals(LOCANT_EL)){ in processHeterogenousHydrides() 1087 Element locantEl = new TokenEl(LOCANT_EL, sb.toString()); in processRelativeCisTrans() 1370 lambdaConventionEl.setName(LOCANT_EL); in processLambdaConvention() 2236 if (possibleLocant != null && possibleLocant.getName().equals(LOCANT_EL) && in handleGroupIrregularities() 2374 Element newLocant =new TokenEl(LOCANT_EL, "9"); in handleGroupIrregularities() [all …]
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H A D | ComponentProcessor.java | 951 elName.equals(LOCANT_EL))) { in removeAndMoveToAppropriateGroupIfRingBridge() 1012 if(elName.equals(LOCANT_EL)) { in determineLocantMeaning() 1481 else if (!elName.equals(LOCANT_EL) && in processCarbohydrates() 1569 if (!locant.getName().equals(LOCANT_EL)){ in processUloseSuffix() 1641 if (potentialLocant.getName().equals(LOCANT_EL)){ in cycliseCarbohydrateAndApplyAlphaBetaStereo() 1910 if (possibleLocantElName.equals(LOCANT_EL)){ in processMultipliers() 2092 if (elName.equals(LOCANT_EL)){ 4181 if (currentElementName.equals(LOCANT_EL)){ in implicitlyBracketToPreviousSubstituentIfAppropriate() 4281 else if (currentElementName.equals(LOCANT_EL)) { in implicitlyBracketToPreviousSubstituentIfAppropriate() 4547 if (el.getName().equals(LOCANT_EL)){ in findLocantsThatCouldBeIndirectLocants() [all …]
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H A D | XmlDeclarations.java | 131 static final String LOCANT_EL ="locant"; field in XmlDeclarations
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H A D | FunctionalReplacement.java | 159 …if (possibleLocant !=null && possibleLocant.getName().equals(LOCANT_EL) && possibleLocant.getAttri… in processPrefixFunctionalReplacementNomenclature() 504 if (possibleLocantOrMultiplier.getName().equals(LOCANT_EL)){ in processAcidReplacingFunctionalClassNomenclatureFunctionalWord() 903 if (possibleLocant.getName().equals(LOCANT_EL)) { in disambiguateMultipliedInfixMeaning()
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H A D | StructureBuildingMethods.java | 2327 …etOrSubOrRoot.getAttributeValue(TYPE_ATR)) && bracketOrSubOrRoot.getAttribute(LOCANT_EL) == null) { in findFragmentWithLocant() 2334 …if (substituentToTryFirst == null && descendent.getAttribute(LOCANT_EL) == null && MATCH_NUMERIC_L… in findFragmentWithLocant() 2348 …if (substituentToTryFirst == null && bracketOrSubOrRoot.getAttribute(LOCANT_EL) == null && MATCH_N… in findFragmentWithLocant() 2367 …etOrSubOrRoot.getAttributeValue(TYPE_ATR)) && bracketOrSubOrRoot.getAttribute(LOCANT_EL) == null) { in findFragmentWithLocant() 2398 …ICIT_TYPE_VAL.equals(child.getAttributeValue(TYPE_ATR)) && child.getAttribute(LOCANT_EL) == null) { in getChildrenIgnoringLocantlessImplicitBrackets()
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H A D | FusedRingBuilder.java | 57 if (beforeBenzo !=null && beforeBenzo.getName().equals(LOCANT_EL)){ in processFusedRings() 965 if (locantEl != null && locantEl.getName().equals(LOCANT_EL)) { in setBenzoHeteroatomPositioning()
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H A D | StructureBuilder.java | 541 List<Element> locantEls =OpsinTools.getDescendantElementsWithTagName(words.get(1), LOCANT_EL); in buildOxide() 720 List<Element> locantEls =OpsinTools.getDescendantElementsWithTagName(words.get(1), LOCANT_EL); in buildCarbonylDerivative() 871 …psinTools.getDescendantElementsWithTagNames(anhydrideWord, new String[]{LOCANT_EL, COLONORSEMICOLO… in buildAnhydride()
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