/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/itf/ |
H A D | ReferenceSequenceItf.h | 46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef 47 struct NGS_ReferenceSequence_v1 struct 58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument 59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * … 62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
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H A D | ReferenceSequenceItf.hpp | 34 struct NGS_ReferenceSequence_v1; 47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/itf/ |
H A D | ReferenceSequenceItf.h | 46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef 47 struct NGS_ReferenceSequence_v1 struct 58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument 59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * … 62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
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H A D | ReferenceSequenceItf.hpp | 34 struct NGS_ReferenceSequence_v1; 47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/itf/ |
H A D | ReferenceSequenceItf.h | 46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef 47 struct NGS_ReferenceSequence_v1 struct 58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument 59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * … 62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
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H A D | ReferenceSequenceItf.hpp | 34 struct NGS_ReferenceSequence_v1; 47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/adapter/ |
H A D | ReferenceSequenceItf.hpp | 49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > 66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 … 67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… 71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/adapter/ |
H A D | ReferenceSequenceItf.hpp | 49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > 66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 … 67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… 71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/adapter/ |
H A D | ReferenceSequenceItf.hpp | 49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > 66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 … 67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err ); 69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… 71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/adapter/ |
H A D | ReferenceSequenceItf.cpp | 41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf() 45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name() 61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular() 76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length() 91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases() 108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/adapter/ |
H A D | ReferenceSequenceItf.cpp | 41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf() 45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name() 61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular() 76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length() 91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases() 108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/adapter/ |
H A D | ReferenceSequenceItf.cpp | 41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf() 45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name() 61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular() 76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length() 91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases() 108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
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/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/dispatch/ |
H A D | ReferenceSequenceItf.cpp | 67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName() 87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular() 107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength() 133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases() 159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
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/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/dispatch/ |
H A D | ReferenceSequenceItf.cpp | 67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName() 87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular() 107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength() 133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases() 159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
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/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/dispatch/ |
H A D | ReferenceSequenceItf.cpp | 67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName() 87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular() 107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength() 133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases() 159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/ |
H A D | NGS_ReferenceSequence.c | 54 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_canon_name ( const NGS_ReferenceSequence_v1 * s… in ITF_ReferenceSequence_v1_get_canon_name() 66 static bool ITF_ReferenceSequence_v1_is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBl… in ITF_ReferenceSequence_v1_is_circular() 78 static uint64_t ITF_ReferenceSequence_v1_get_length ( const NGS_ReferenceSequence_v1 * self, NGS_Er… in ITF_ReferenceSequence_v1_get_length() 90 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_bases ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_bases() 102 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_chunk ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_chunk()
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H A D | NCBI-NGS.h | 43 struct NGS_ReferenceSequence_v1; 50 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st…
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H A D | NCBI-NGS.c | 55 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st… in NCBI_NGS_OpenReferenceSequence() 65 return ( struct NGS_ReferenceSequence_v1 * ) ret; in NCBI_NGS_OpenReferenceSequence()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/ |
H A D | NGS_ReferenceSequence.c | 54 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_canon_name ( const NGS_ReferenceSequence_v1 * s… in ITF_ReferenceSequence_v1_get_canon_name() 66 static bool ITF_ReferenceSequence_v1_is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBl… in ITF_ReferenceSequence_v1_is_circular() 78 static uint64_t ITF_ReferenceSequence_v1_get_length ( const NGS_ReferenceSequence_v1 * self, NGS_Er… in ITF_ReferenceSequence_v1_get_length() 90 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_bases ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_bases() 102 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_chunk ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_chunk()
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H A D | NCBI-NGS.h | 43 struct NGS_ReferenceSequence_v1; 50 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st…
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H A D | NCBI-NGS.c | 55 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st… in NCBI_NGS_OpenReferenceSequence() 65 return ( struct NGS_ReferenceSequence_v1 * ) ret; in NCBI_NGS_OpenReferenceSequence()
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-c++/ |
H A D | NCBI-NGS.cpp | 98 NGS_ReferenceSequence_v1 * ret = NCBI_NGS_OpenReferenceSequence ( spec . c_str (), & err ); in openReferenceSequence()
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs-c++/ |
H A D | NCBI-NGS.cpp | 98 NGS_ReferenceSequence_v1 * ret = NCBI_NGS_OpenReferenceSequence ( spec . c_str (), & err ); in openReferenceSequence()
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