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Searched refs:NGS_ReferenceSequence_v1 (Results 1 – 23 of 23) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/itf/
H A DReferenceSequenceItf.h46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef
47 struct NGS_ReferenceSequence_v1 struct
58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument
59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
H A DReferenceSequenceItf.hpp34 struct NGS_ReferenceSequence_v1;
47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/itf/
H A DReferenceSequenceItf.h46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef
47 struct NGS_ReferenceSequence_v1 struct
58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument
59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
H A DReferenceSequenceItf.hpp34 struct NGS_ReferenceSequence_v1;
47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/itf/
H A DReferenceSequenceItf.h46 typedef struct NGS_ReferenceSequence_v1 NGS_ReferenceSequence_v1; typedef
47 struct NGS_ReferenceSequence_v1 struct
58 …NGS_String_v1 * ( CC * get_canon_name ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *… argument
59 bool ( CC * is_circular ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
60 uint64_t ( CC * get_length ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
61 …NGS_String_v1 * ( CC * get_ref_bases ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
62 …NGS_String_v1 * ( CC * get_ref_chunk ) ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * …
H A DReferenceSequenceItf.hpp34 struct NGS_ReferenceSequence_v1;
47 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/ngs/adapter/
H A DReferenceSequenceItf.hpp49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 …
67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/ngs/adapter/
H A DReferenceSequenceItf.hpp49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 …
67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/ngs/adapter/
H A DReferenceSequenceItf.hpp49 class ReferenceSequenceItf : public Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 >
66 …static NGS_String_v1 * CC get_canon_name ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 …
67 static bool CC is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
68 … static uint64_t CC get_length ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 * err );
69 …static NGS_String_v1 * CC get_ref_bases ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
71 …static NGS_String_v1 * CC get_ref_chunk ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBlock_v1 *…
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/adapter/
H A DReferenceSequenceItf.cpp41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf()
45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name()
61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular()
76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length()
91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases()
108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/adapter/
H A DReferenceSequenceItf.cpp41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf()
45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name()
61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular()
76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length()
91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases()
108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/adapter/
H A DReferenceSequenceItf.cpp41 : Refcount < ReferenceSequenceItf, NGS_ReferenceSequence_v1 > ( & ivt . dad ) in ReferenceSequenceItf()
45 …NGS_String_v1 * CC ReferenceSequenceItf :: get_canon_name ( const NGS_ReferenceSequence_v1 * iself… in get_canon_name()
61 …bool CC ReferenceSequenceItf :: is_circular ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBlock… in is_circular()
76 …uint64_t CC ReferenceSequenceItf :: get_length ( const NGS_ReferenceSequence_v1 * iself, NGS_ErrBl… in get_length()
91 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_bases ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_bases()
108 …NGS_String_v1 * CC ReferenceSequenceItf :: get_ref_chunk ( const NGS_ReferenceSequence_v1 * iself,… in get_ref_chunk()
/dports/biology/sra-tools/sra-tools-2.11.0/ngs/ngs-sdk/dispatch/
H A DReferenceSequenceItf.cpp67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName()
87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular()
107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength()
133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases()
159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
/dports/biology/ncbi-vdb/ngs-2.11.0/ngs-sdk/dispatch/
H A DReferenceSequenceItf.cpp67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName()
87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular()
107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength()
133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases()
159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
/dports/biology/ngs-sdk/ngs-2.11.1/ngs-sdk/dispatch/
H A DReferenceSequenceItf.cpp67 const NGS_ReferenceSequence_v1 * self = Test (); in getCanonicalName()
87 const NGS_ReferenceSequence_v1 * self = Test (); in getIsCircular()
107 const NGS_ReferenceSequence_v1 * self = Test (); in getLength()
133 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceBases()
159 const NGS_ReferenceSequence_v1 * self = Test (); in getReferenceChunk()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs/
H A DNGS_ReferenceSequence.c54 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_canon_name ( const NGS_ReferenceSequence_v1 * s… in ITF_ReferenceSequence_v1_get_canon_name()
66 static bool ITF_ReferenceSequence_v1_is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBl… in ITF_ReferenceSequence_v1_is_circular()
78 static uint64_t ITF_ReferenceSequence_v1_get_length ( const NGS_ReferenceSequence_v1 * self, NGS_Er… in ITF_ReferenceSequence_v1_get_length()
90 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_bases ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_bases()
102 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_chunk ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_chunk()
H A DNCBI-NGS.h43 struct NGS_ReferenceSequence_v1;
50 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st…
H A DNCBI-NGS.c55 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st… in NCBI_NGS_OpenReferenceSequence()
65 return ( struct NGS_ReferenceSequence_v1 * ) ret; in NCBI_NGS_OpenReferenceSequence()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs/
H A DNGS_ReferenceSequence.c54 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_canon_name ( const NGS_ReferenceSequence_v1 * s… in ITF_ReferenceSequence_v1_get_canon_name()
66 static bool ITF_ReferenceSequence_v1_is_circular ( const NGS_ReferenceSequence_v1 * self, NGS_ErrBl… in ITF_ReferenceSequence_v1_is_circular()
78 static uint64_t ITF_ReferenceSequence_v1_get_length ( const NGS_ReferenceSequence_v1 * self, NGS_Er… in ITF_ReferenceSequence_v1_get_length()
90 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_bases ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_bases()
102 static NGS_String_v1 * ITF_ReferenceSequence_v1_get_ref_chunk ( const NGS_ReferenceSequence_v1 * se… in ITF_ReferenceSequence_v1_get_ref_chunk()
H A DNCBI-NGS.h43 struct NGS_ReferenceSequence_v1;
50 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st…
H A DNCBI-NGS.c55 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, st… in NCBI_NGS_OpenReferenceSequence()
65 return ( struct NGS_ReferenceSequence_v1 * ) ret; in NCBI_NGS_OpenReferenceSequence()
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/ngs-c++/
H A DNCBI-NGS.cpp98 NGS_ReferenceSequence_v1 * ret = NCBI_NGS_OpenReferenceSequence ( spec . c_str (), & err ); in openReferenceSequence()
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/ngs-c++/
H A DNCBI-NGS.cpp98 NGS_ReferenceSequence_v1 * ret = NCBI_NGS_OpenReferenceSequence ( spec . c_str (), & err ); in openReferenceSequence()