1 /*===========================================================================
2 *
3 * PUBLIC DOMAIN NOTICE
4 * National Center for Biotechnology Information
5 *
6 * This software/database is a "United States Government Work" under the
7 * terms of the United States Copyright Act. It was written as part of
8 * the author's official duties as a United States Government employee and
9 * thus cannot be copyrighted. This software/database is freely available
10 * to the public for use. The National Library of Medicine and the U.S.
11 * Government have not placed any restriction on its use or reproduction.
12 *
13 * Although all reasonable efforts have been taken to ensure the accuracy
14 * and reliability of the software and data, the NLM and the U.S.
15 * Government do not and cannot warrant the performance or results that
16 * may be obtained by using this software or data. The NLM and the U.S.
17 * Government disclaim all warranties, express or implied, including
18 * warranties of performance, merchantability or fitness for any particular
19 * purpose.
20 *
21 * Please cite the author in any work or product based on this material.
22 *
23 * ===========================================================================
24 *
25 */
26
27 #include "NCBI-NGS.h"
28 #include "NGS_ErrBlock.h"
29 #include "NGS_ReadCollection.h"
30 #include "NGS_ReferenceSequence.h"
31
32 #include <kfc/ctx.h>
33 #include <kfc/rsrc.h>
34 #include <kfc/except.h>
35 #include <kfc/xc.h>
36
37 /*--------------------------------------------------------------------------
38 * NCBI NGS engine
39 * link against ncbi-vdb library
40 */
41
NCBI_NGS_OpenReadCollection(const char * spec,struct NGS_ErrBlock_v1 * err)42 LIB_EXPORT struct NGS_ReadCollection_v1 * NCBI_NGS_OpenReadCollection ( const char * spec, struct NGS_ErrBlock_v1 * err )
43 {
44 HYBRID_FUNC_ENTRY ( rcSRA, rcDatabase, rcOpening );
45
46 ON_FAIL ( NGS_ReadCollection * ret = NGS_ReadCollectionMake ( ctx, spec ) )
47 {
48 NGS_ErrBlockThrow ( err, ctx );
49 }
50
51 CLEAR ();
52 return ( struct NGS_ReadCollection_v1 * ) ret;
53 }
54
NCBI_NGS_OpenReferenceSequence(const char * spec,struct NGS_ErrBlock_v1 * err)55 LIB_EXPORT struct NGS_ReferenceSequence_v1 * NCBI_NGS_OpenReferenceSequence ( const char * spec, struct NGS_ErrBlock_v1 * err )
56 {
57 HYBRID_FUNC_ENTRY ( rcSRA, rcTable, rcOpening );
58
59 ON_FAIL ( NGS_ReferenceSequence * ret = NGS_ReferenceSequenceMake ( ctx, spec ) )
60 {
61 NGS_ErrBlockThrow ( err, ctx );
62 }
63
64 CLEAR ();
65 return ( struct NGS_ReferenceSequence_v1 * ) ret;
66 }
67