Home
last modified time | relevance | path

Searched refs:Oligoindex_array_T (Results 1 – 12 of 12) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Doligoindex_hr.h90 typedef struct Oligoindex_array_T *Oligoindex_array_T; typedef
99 Oligoindex_array_length (Oligoindex_array_T oligoindices);
101 Oligoindex_array_elt (Oligoindex_array_T oligoindices, int source);
103 extern Oligoindex_array_T
106 extern Oligoindex_array_T
125 Oligoindex_array_free(Oligoindex_array_T *old);
130 Oligoindex_array_T array, T this, char *queryuc_ptr,
H A Dstage2.h54 int genestrand, Stage2_alloc_T stage2_alloc, Oligoindex_array_T oligoindices,
64 Oligoindex_array_T oligoindices,
74 Oligoindex_array_T oligoindices,
83 Oligoindex_array_T oligoindices,
92 Oligoindex_array_T oligoindices,
H A Dstage3.h326 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
357 …int sense_filter, Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool);
389 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
440 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
H A Dconcordance.c131 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
233 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
334 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool,
435 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_genome_plus()
566 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_genome_minus()
705 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in Concordance_pair_up_genome()
974 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_distant_plus_plus()
1124 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_distant_minus_minus()
1273 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_distant_plus_minus()
1393 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in do_distant_minus_plus()
[all …]
H A Dstage1hr.h121 Oligoindex_array_T oligoindices_minor,
H A Dgmap.c1149 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in update_stage3middle_list()
1253 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in update_stage3list()
1441 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in stage3_from_usersegment()
1763 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in stage3_from_gregions()
2661 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in check_for_local()
3104 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in check_for_chimera()
3621 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in check_middle_piece_local()
3828 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in check_middle_piece_chimera()
4059 Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindices_minor, in apply_stage3()
4423 …Stage2_alloc_T stage2_alloc, Oligoindex_array_T oligoindices_major, Oligoindex_array_T oligoindice… in process_request()
[all …]
H A Dstage2.c5829 int genestrand, Stage2_alloc_T stage2_alloc, Oligoindex_array_T oligoindices, in Stage2_scan()
6553 Oligoindex_array_T oligoindices, in Stage2_compute()
7072 Oligoindex_array_T oligoindices, in Stage2_compute_one()
7243 Oligoindex_array_T oligoindices, in Stage2_compute_starts()
7436 Oligoindex_array_T oligoindices, in Stage2_compute_ends()
H A Dstage3.c11093 Oligoindex_array_T oligoindices_minor, in traverse_dual_break()
11434 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in build_dual_breaks()
12019 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in build_pairs_introns()
13531 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in path_compute_dir()
14180 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in path_compute_final()
15693 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in Stage3_compute_middle()
15846 …int sense_filter, Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool)… in Stage3_compute_ends()
16735 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in Stage3_compute_one()
18446 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in recompute_for_cdna_direction()
18546 Oligoindex_array_T oligoindices_minor, Diagpool_T diagpool, Cellpool_T cellpool, in Stage3_merge_local()
H A Doligoindex_hr.c119 struct Oligoindex_array_T { struct
8798 Oligoindex_array_length (Oligoindex_array_T oligoindices) { in Oligoindex_array_length()
8803 Oligoindex_array_elt (Oligoindex_array_T oligoindices, int source) { in Oligoindex_array_elt()
8808 Oligoindex_array_T
8810 Oligoindex_array_T new = (Oligoindex_array_T) MALLOC_KEEP(sizeof(*new)); in Oligoindex_array_new_major()
8835 Oligoindex_array_T
8837 Oligoindex_array_T new = (Oligoindex_array_T) MALLOC_KEEP(sizeof(*new)); in Oligoindex_array_new_minor()
34066 Oligoindex_array_free (Oligoindex_array_T *old) { in Oligoindex_array_free()
34143 Oligoindex_array_T array, T this, char *queryuc_ptr, in Oligoindex_get_mappings()
H A Dgsnap.c929 Oligoindex_array_T oligoindices_minor, in process_request()
H A Dstage1hr.c1423 Oligoindex_array_T oligoindices_minor, in Stage1_single_read()
/dports/biology/gmap/gmap-2020-09-12/
H A DChangeLog7260 * oligoindex_hr.c: Freeing storage memory in Oligoindex_array_T object
7297 * oligoindex_hr.c: Allocating storage for Oligoindex_array_T
7313 Oligoindex_array_T object, which also holds storage