Searched refs:PAIRED_INVERSION (Results 1 – 5 of 5) sorted by relevance
| /dports/biology/gmap/gmap-2020-09-12/src/ |
| H A D | resulthr.h | 11 typedef enum {CONCORDANT, PAIRED_UNSPECIFIED, PAIRED_INVERSION, PAIRED_SCRAMBLE, PAIRED_TOOLONG, enumerator
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| H A D | resulthr.c | 56 case PAIRED_INVERSION: return "paired_scramble"; in Pairtype_string()
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| H A D | concordance.c | 1357 if ((stage3pair = Stage3pair_new(hit5,hit3,genestrand,sensedir,/*pairtype*/PAIRED_INVERSION, in do_distant_plus_minus()
1477 if ((stage3pair = Stage3pair_new(hit5,hit3,genestrand,sensedir,/*pairtype*/PAIRED_INVERSION, in do_distant_minus_plus()
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| H A D | samprint.c | 1817 } else if ((pairtype = Stage3pair_determine_pairtype(stage3pair)) == PAIRED_INVERSION) { in SAM_print_paired()
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| H A D | stage3hr.c | 9590 return PAIRED_INVERSION; in Stage3_determine_pairtype()
9713 case PAIRED_INVERSION: FPRINTF(fp,",pairtype:inversion"); break; in print_pair_info()
10205 } else if (stage3pair->pairtype == PAIRED_INVERSION) { in Stage3pair_print_end()
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