Searched refs:Pairdistance_T (Results 1 – 5 of 5) sorted by relevance
/dports/biology/gmap/gmap-2020-09-12/src/ |
H A D | dynprog.h | 87 typedef short Pairdistance_T; typedef 155 extern Pairdistance_T **pairdistance_array[NMISMATCHTYPES]; 157 extern Pairdistance_T **pairdistance_array_plus_128[NMISMATCHTYPES];
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H A D | dynprog.c | 814 Pairdistance_T **pairdistance_array[NMISMATCHTYPES]; 816 Pairdistance_T **pairdistance_array_plus_128[NMISMATCHTYPES]; 832 permute_cases (int NA1, int NA2, Pairdistance_T score, Mode_T mode) { in permute_cases() 905 permute_cases_oneway (int NA1, int NA2, Pairdistance_T score, int genestrand) { in permute_cases_oneway() 981 pairdistance_array[i] = (Pairdistance_T **) CALLOC(128,sizeof(Pairdistance_T *)); in Dynprog_init() 982 pairdistance_array[i][0] = (Pairdistance_T *) CALLOC(128*128,sizeof(Pairdistance_T)); in Dynprog_init() 984 pairdistance_array_plus_128[i] = (Pairdistance_T **) CALLOC(128,sizeof(Pairdistance_T *)); in Dynprog_init() 985 pairdistance_array_plus_128[i][0] = (Pairdistance_T *) CALLOC(128*128,sizeof(Pairdistance_T)); in Dynprog_init() 1215 Pairdistance_T **pairdistance_array_type; in Dynprog_standard()
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H A D | dynprog_simd.c | 2307 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_nonavx2() 3002 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8() 3812 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_upper_nonavx2() 4267 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_upper() 4804 Pairdistance_T **pairdistance_array_type, score1, score2; in Dynprog_simd_8_lower_nonavx2() 5266 Pairdistance_T **pairdistance_array_type, score1, score2; in Dynprog_simd_8_lower() 5829 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_nonavx2() 6458 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16() 7199 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_upper_nonavx2() 7552 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_upper() [all …]
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H A D | dynprog_single.c | 363 Pairdistance_T **pairdistance_array_type; in single_gap_simple()
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H A D | dynprog_genome.c | 3016 Pairdistance_T **pairdistance_array_type; in genome_gap_simple()
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