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Searched refs:Pairdistance_T (Results 1 – 5 of 5) sorted by relevance

/dports/biology/gmap/gmap-2020-09-12/src/
H A Ddynprog.h87 typedef short Pairdistance_T; typedef
155 extern Pairdistance_T **pairdistance_array[NMISMATCHTYPES];
157 extern Pairdistance_T **pairdistance_array_plus_128[NMISMATCHTYPES];
H A Ddynprog.c814 Pairdistance_T **pairdistance_array[NMISMATCHTYPES];
816 Pairdistance_T **pairdistance_array_plus_128[NMISMATCHTYPES];
832 permute_cases (int NA1, int NA2, Pairdistance_T score, Mode_T mode) { in permute_cases()
905 permute_cases_oneway (int NA1, int NA2, Pairdistance_T score, int genestrand) { in permute_cases_oneway()
981 pairdistance_array[i] = (Pairdistance_T **) CALLOC(128,sizeof(Pairdistance_T *)); in Dynprog_init()
982 pairdistance_array[i][0] = (Pairdistance_T *) CALLOC(128*128,sizeof(Pairdistance_T)); in Dynprog_init()
984 pairdistance_array_plus_128[i] = (Pairdistance_T **) CALLOC(128,sizeof(Pairdistance_T *)); in Dynprog_init()
985 pairdistance_array_plus_128[i][0] = (Pairdistance_T *) CALLOC(128*128,sizeof(Pairdistance_T)); in Dynprog_init()
1215 Pairdistance_T **pairdistance_array_type; in Dynprog_standard()
H A Ddynprog_simd.c2307 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_nonavx2()
3002 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8()
3812 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_upper_nonavx2()
4267 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_8_upper()
4804 Pairdistance_T **pairdistance_array_type, score1, score2; in Dynprog_simd_8_lower_nonavx2()
5266 Pairdistance_T **pairdistance_array_type, score1, score2; in Dynprog_simd_8_lower()
5829 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_nonavx2()
6458 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16()
7199 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_upper_nonavx2()
7552 Pairdistance_T **pairdistance_array_type; in Dynprog_simd_16_upper()
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H A Ddynprog_single.c363 Pairdistance_T **pairdistance_array_type; in single_gap_simple()
H A Ddynprog_genome.c3016 Pairdistance_T **pairdistance_array_type; in genome_gap_simple()