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Searched refs:PlacementSetIterator (Results 1 – 8 of 8) sorted by relevance

/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/
H A Diterator.h406 typedef struct PlacementSetIterator PlacementSetIterator; typedef
417 PlacementSetIterator **iter );
425 ( PlacementSetIterator *self, PlacementIterator *pi );
431 ALIGN_EXTERN rc_t CC PlacementSetIteratorAddRef ( const PlacementSetIterator *self );
432 ALIGN_EXTERN rc_t CC PlacementSetIteratorRelease ( const PlacementSetIterator *self );
435 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self,
438 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self,
454 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextAvailPos ( const PlacementSetIterator *self,
467 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self,
482 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextIdAt ( PlacementSetIterator *self,
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/
H A Diterator.h406 typedef struct PlacementSetIterator PlacementSetIterator; typedef
417 PlacementSetIterator **iter );
425 ( PlacementSetIterator *self, PlacementIterator *pi );
431 ALIGN_EXTERN rc_t CC PlacementSetIteratorAddRef ( const PlacementSetIterator *self );
432 ALIGN_EXTERN rc_t CC PlacementSetIteratorRelease ( const PlacementSetIterator *self );
435 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self,
438 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self,
454 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextAvailPos ( const PlacementSetIterator *self,
467 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self,
482 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextIdAt ( PlacementSetIterator *self,
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/
H A Dpl_iterator.c81 struct PlacementSetIterator struct
96 PlacementSetIterator **iter ) in AlignMgrMakePlacementSetIterator() argument
107 PlacementSetIterator * psi = calloc( sizeof * psi, 1 ); in AlignMgrMakePlacementSetIterator()
404 static void pl_set_iter_clear_curr_ref_window( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref_window()
414 static void pl_set_iter_clear_curr_ref( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref()
435 PlacementSetIterator * self = ( PlacementSetIterator * ) cself; in PlacementSetIteratorRelease()
452 LIB_EXPORT rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, in PlacementSetIteratorNextReference()
493 LIB_EXPORT rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, in PlacementSetIteratorNextWindow()
593 PlacementSetIterator *self = ( PlacementSetIterator * )cself; in PlacementSetIteratorNextAvailPos()
629 LIB_EXPORT rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, in PlacementSetIteratorNextRecordAt()
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H A Dref_iterator.c244 PlacementSetIterator * pl_set_iter; /* holds a list of placement-iterators */
/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/
H A Dpl_iterator.c81 struct PlacementSetIterator struct
96 PlacementSetIterator **iter ) in AlignMgrMakePlacementSetIterator() argument
107 PlacementSetIterator * psi = calloc( sizeof * psi, 1 ); in AlignMgrMakePlacementSetIterator()
404 static void pl_set_iter_clear_curr_ref_window( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref_window()
414 static void pl_set_iter_clear_curr_ref( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref()
435 PlacementSetIterator * self = ( PlacementSetIterator * ) cself; in PlacementSetIteratorRelease()
452 LIB_EXPORT rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, in PlacementSetIteratorNextReference()
493 LIB_EXPORT rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, in PlacementSetIteratorNextWindow()
593 PlacementSetIterator *self = ( PlacementSetIterator * )cself; in PlacementSetIteratorNextAvailPos()
629 LIB_EXPORT rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, in PlacementSetIteratorNextRecordAt()
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H A Dref_iterator.c244 PlacementSetIterator * pl_set_iter; /* holds a list of placement-iterators */
/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/
H A Dsam-aligned.c551 PlacementSetIterator * const set_iter, in add_table_pl_iter()
648 PlacementSetIterator * const set_iter, in add_pl_iters()
750 PlacementSetIterator * set_iter;
806 PlacementSetIterator * const set_iter, in prepare_regions()
1982 PlacementSetIterator * const set_iter, in walk_position()
2049 PlacementSetIterator * const set_iter, in walk_window()
2083 PlacementSetIterator * const set_iter, in walk_reference()
2136 PlacementSetIterator * const set_iter, in walk_placements()
2208 PlacementSetIterator * set_iter; in print_all_aligned_spots_of_this_reference()
2299 PlacementSetIterator * set_iter; in print_all_aligned_spots_1()
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H A Dcmdline_cmn.h103 PlacementSetIterator *plset_iter;