Searched refs:PlacementSetIterator (Results 1 – 8 of 8) sorted by relevance
/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/interfaces/align/ |
H A D | iterator.h | 406 typedef struct PlacementSetIterator PlacementSetIterator; typedef 417 PlacementSetIterator **iter ); 425 ( PlacementSetIterator *self, PlacementIterator *pi ); 431 ALIGN_EXTERN rc_t CC PlacementSetIteratorAddRef ( const PlacementSetIterator *self ); 432 ALIGN_EXTERN rc_t CC PlacementSetIteratorRelease ( const PlacementSetIterator *self ); 435 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, 438 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, 454 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextAvailPos ( const PlacementSetIterator *self, 467 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, 482 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextIdAt ( PlacementSetIterator *self,
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/interfaces/align/ |
H A D | iterator.h | 406 typedef struct PlacementSetIterator PlacementSetIterator; typedef 417 PlacementSetIterator **iter ); 425 ( PlacementSetIterator *self, PlacementIterator *pi ); 431 ALIGN_EXTERN rc_t CC PlacementSetIteratorAddRef ( const PlacementSetIterator *self ); 432 ALIGN_EXTERN rc_t CC PlacementSetIteratorRelease ( const PlacementSetIterator *self ); 435 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, 438 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, 454 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextAvailPos ( const PlacementSetIterator *self, 467 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, 482 ALIGN_EXTERN rc_t CC PlacementSetIteratorNextIdAt ( PlacementSetIterator *self,
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/dports/biology/sra-tools/sra-tools-2.11.0/ncbi-vdb/libs/align/ |
H A D | pl_iterator.c | 81 struct PlacementSetIterator struct 96 PlacementSetIterator **iter ) in AlignMgrMakePlacementSetIterator() argument 107 PlacementSetIterator * psi = calloc( sizeof * psi, 1 ); in AlignMgrMakePlacementSetIterator() 404 static void pl_set_iter_clear_curr_ref_window( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref_window() 414 static void pl_set_iter_clear_curr_ref( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref() 435 PlacementSetIterator * self = ( PlacementSetIterator * ) cself; in PlacementSetIteratorRelease() 452 LIB_EXPORT rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, in PlacementSetIteratorNextReference() 493 LIB_EXPORT rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, in PlacementSetIteratorNextWindow() 593 PlacementSetIterator *self = ( PlacementSetIterator * )cself; in PlacementSetIteratorNextAvailPos() 629 LIB_EXPORT rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, in PlacementSetIteratorNextRecordAt() [all …]
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H A D | ref_iterator.c | 244 PlacementSetIterator * pl_set_iter; /* holds a list of placement-iterators */
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/dports/biology/ncbi-vdb/ncbi-vdb-2.11.0/libs/align/ |
H A D | pl_iterator.c | 81 struct PlacementSetIterator struct 96 PlacementSetIterator **iter ) in AlignMgrMakePlacementSetIterator() argument 107 PlacementSetIterator * psi = calloc( sizeof * psi, 1 ); in AlignMgrMakePlacementSetIterator() 404 static void pl_set_iter_clear_curr_ref_window( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref_window() 414 static void pl_set_iter_clear_curr_ref( PlacementSetIterator *self ) in pl_set_iter_clear_curr_ref() 435 PlacementSetIterator * self = ( PlacementSetIterator * ) cself; in PlacementSetIteratorRelease() 452 LIB_EXPORT rc_t CC PlacementSetIteratorNextReference ( PlacementSetIterator *self, in PlacementSetIteratorNextReference() 493 LIB_EXPORT rc_t CC PlacementSetIteratorNextWindow ( PlacementSetIterator *self, in PlacementSetIteratorNextWindow() 593 PlacementSetIterator *self = ( PlacementSetIterator * )cself; in PlacementSetIteratorNextAvailPos() 629 LIB_EXPORT rc_t CC PlacementSetIteratorNextRecordAt ( PlacementSetIterator *self, in PlacementSetIteratorNextRecordAt() [all …]
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H A D | ref_iterator.c | 244 PlacementSetIterator * pl_set_iter; /* holds a list of placement-iterators */
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/dports/biology/sra-tools/sra-tools-2.11.0/tools/sra-pileup/ |
H A D | sam-aligned.c | 551 PlacementSetIterator * const set_iter, in add_table_pl_iter() 648 PlacementSetIterator * const set_iter, in add_pl_iters() 750 PlacementSetIterator * set_iter; 806 PlacementSetIterator * const set_iter, in prepare_regions() 1982 PlacementSetIterator * const set_iter, in walk_position() 2049 PlacementSetIterator * const set_iter, in walk_window() 2083 PlacementSetIterator * const set_iter, in walk_reference() 2136 PlacementSetIterator * const set_iter, in walk_placements() 2208 PlacementSetIterator * set_iter; in print_all_aligned_spots_of_this_reference() 2299 PlacementSetIterator * set_iter; in print_all_aligned_spots_1() [all …]
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H A D | cmdline_cmn.h | 103 PlacementSetIterator *plset_iter;
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